compound-library, crystal-library and soaking-service

Adds compound library service that keeps track of all the compounds.
Adds crystal library service that keeps track of all the crystals.
Adds compound soaking service that tracks soaked compounds

What's Changed

• created backend folder. moved backend stuff to folder by @kaimsfd in #110
• Add .vscode to gitignore by @kaimsfd in #123
• Bump library/rust from 1.72.0-bullseye to 1.72.1-bullseye in /.devcontainer by @dependabot in #115
• Bump actions/checkout from 4.0.0 to 4.1.0 by @dependabot in #116
• Bump tungstenite from 0.20.0 to 0.20.1 in /backend by @dependabot in #121
• Fix pre-commit hooks by @garryod in #125
• Store ONNX files in Git LFS by @garryod in #126
• Remove .env file mount from OPA dev container by @garryod in #128
• Use templating for pin-packing opa url by @garryod in #127
• Bump chart application versions to 0.0.5 by @garryod in #129
• Add devcontainer smoke test to CI by @garryod in #130
• [clap_for_s3] Make force path style a Clap action by @garryod in #131
• [targeting] Add option to skip creation of S3 bucket by @garryod in #132
• Pass chimp chomp RabbitMQ URL in as env var by @garryod in #133
• [chimp_protocol] Return predictions as integers by @garryod in #134
• Add a deployment chart for the targeting service by @garryod in #137
• [chimp_chomp] Download images from URL by @garryod in #135
• [graphql_endpoints] Forward authoriztion token in GraphQLSubscription by @garryod in #136
• Consistently name plate & well in across API by @garryod in #138
• Bump actions/checkout from 4.0.0 to 4.1.0 by @dependabot in #140
• Bump webpki from 0.22.1 to 0.22.2 in /backend by @dependabot in #141
• create frontend template by @kaimsfd in #124
• Bump library/rust from 1.72.1-bullseye to 1.73.0-bullseye in /.devcontainer by @dependabot in #148
• Bump rustix from 0.37.23 to 0.37.25 in /backend by @dependabot in #149
• Bump @babel/traverse from 7.23.0 to 7.23.2 in /frontend by @dependabot in #150
• changed backend dependabot dir to /backend/ by @kaimsfd in #153
• added frontend dependabot updates by @kaimsfd in #152
• Bump actions/checkout from 4.1.0 to 4.1.1 by @dependabot in #154
• Bump clap from 4.4.4 to 4.4.6 in /backend by @dependabot in #156
• Bump tracing from 0.1.37 to 0.1.40 in /backend by @dependabot in #161
• Bump ort from 1.15.2 to 1.16.2 in /backend by @dependabot in #163
• Bump reqwest from 0.11.20 to 0.11.22 in /backend by @dependabot in #160
• Bump opencv from 0.84.5 to 0.85.3 in /backend by @dependabot in #155
• Bump tokio from 1.32.0 to 1.33.0 in /backend by @dependabot in #158
• Bump uuid from 1.4.1 to 1.5.0 in /backend by @dependabot in #159
• Bump itertools from 0.10.5 to 0.11.0 in /backend by @dependabot in #162
• Bump @babel/core from 7.23.0 to 7.23.2 in /frontend by @dependabot in #188
• Bump resolve-url-loader from 4.0.0 to 5.0.0 in /frontend by @dependabot in #186
• Bump @testing-library/react from 13.4.0 to 14.0.0 in /frontend by @dependabot in #184
• Bump web-vitals from 2.1.4 to 3.5.0 in /frontend by @dependabot in #182
• Bump webpack-manifest-plugin from 4.1.1 to 5.0.0 in /frontend by @dependabot in #181
• Bump dotenv from 10.0.0 to 16.3.1 in /frontend by @dependabot in #179
• Bump @testing-library/user-event from 13.5.0 to 14.5.1 in /frontend by @dependabot in #177
• Bump jest-resolve from 27.5.1 to 29.7.0 in /frontend by @dependabot in #176
• Bump camelcase from 6.3.0 to 8.0.0 in /frontend by @dependabot in #175
• Bump eslint from 8.49.0 to 8.51.0 in /frontend by @dependabot in #174
• Bump bfj from 7.1.0 to 8.0.0 in /frontend by @dependabot in #168
• Bump dotenv-expand from 5.1.0 to 10.0.0 in /frontend by @dependabot in #180
• Bump resolve from 1.22.6 to 1.22.8 in /frontend by @dependabot in #178
• Bump @testing-library/jest-dom from 5.17.0 to 6.1.4 in /frontend by @dependabot in #173
• Bump thiserror from 1.0.48 to 1.0.50 in /backend by @dependabot in #191
• Bump css-minimizer-webpack-plugin from 3.4.1 to 5.0.1 in /frontend by @dependabot in #189
• Bump workbox-webpack-plugin from 6.6.1 to 7.0.0 in /frontend by @dependabot in #187
• Bump fs-extra from 10.1.0 to 11.1.1 in /frontend by @dependabot in #185
• Bump babel-loader from 8.3.0 to 9.1.3 in /frontend by @dependabot in #169
• Bump @svgr/webpack from 5.5.0 to 8.1.0 in /frontend by @dependabot in #183
• Bump jest-watch-typeahead from 1.1.0 to 2.2.2 in /frontend by @dependabot in #172
• Bump serde from 1.0.188 to 1.0.189 in /backend by @dependabot in #164
• Bump react-refresh from 0.11.0 to 0.14.0 in /frontend by @dependabot in #170
• Bump webpack from 5.88.2 to 5.89.0 in /frontend by @dependabot in #167
• Bump source-map-loader from 3.0.2 to 4.0.1 in /frontend by @dependabot in #166
• Bump babel-jest from 27.5.1 to 29.7.0 in /frontend by @dependabot in #171
• changed root docker dependabot check to /backend/ by @kaimsfd in #190
• Bump eslint from 8.51.0 to 8.52.0 in /frontend by @dependabot in #193
• Bump Swatinem/rust-cache from 2.7.0 to 2.7.1 by @dependabot in #194
• Bump library/rust from 1.72.0-bullseye to 1.73.0-bullseye in /backend by @dependabot in #192
• Bump actions/setup-node from 3.8.1 to 4.0.0 by @dependabot in #195
• Bump awalsh128/cache-apt-pkgs-action from 1.3.0 to 1.3.1 by @dependabot in #197
• Bump serde_json from 1.0.107 to 1.0.108 in /backend by @dependabot in #198
• Bump futures-core from 0.3.28 to 0.3.29 in /backend by @dependabot in #199
• Bump serde from 1.0.189 to 1.0.190 in /backend by @dependabot in #200
• Bump futures from 0.3.28 to 0.3.29 in /backend by @dependabot in #204
• Bump opencv from 0.85.3 to 0.86.0 in /backend by @dependabot in #201
• Bump helm/chart-testing-action from 2.4.0 to 2.6.0 by @dependabot in #206
• Bump clap from 4.4.6 to 4.4.7 in /backend by @dependabot in #202
• Bump chrono-tz from 0.8.3 to 0.8.4 in /backend by @dependabot in #203
• Bump opencv from 0.86.0 to 0.86.1 in /backend by @dependabot in #208
• Bump helm/chart-testing-action from 2.6.0 to 2.6.1 by @dependabot in https://github.com/DiamondLightSource/xcheml...

Targeting

Adds the Targeting service, responsible for managing the targeting image store and the corresponding predictions

What's Changed

• Bump opencv from 0.84.4 to 0.84.5 by @dependabot in #64
• Bump clap from 4.3.19 to 4.3.21 by @dependabot in #65
• Bump actions/deploy-pages from 2.0.3 to 2.0.4 by @dependabot in #68
• Bump tokio from 1.29.1 to 1.31.0 by @dependabot in #66
• Bump Swatinem/rust-cache from 2.6.0 to 2.6.1 by @dependabot in #67
• Bump anyhow from 1.0.72 to 1.0.75 by @dependabot in #72
• Bump thiserror from 1.0.44 to 1.0.47 by @dependabot in #73
• Bump Swatinem/rust-cache from 2.6.1 to 2.6.2 by @dependabot in #75
• Bump rustls-webpki from 0.100.1 to 0.100.2 by @dependabot in #76
• Bump actions/checkout from 3.5.3 to 3.6.0 by @dependabot in #79
• Bump docker/setup-buildx-action from 2.9.1 to 2.10.0 by @dependabot in #80
• Bump library/rust from 1.71.1-bullseye to 1.72.0-bullseye in /.devcontainer by @dependabot in #82
• Bump library/rust from 1.71.1-bullseye to 1.72.0-bullseye by @dependabot in #81
• Bump clap from 4.3.21 to 4.4.1 by @dependabot in #77
• Bump reqwest from 0.11.18 to 0.11.20 by @dependabot in #78
• Bump serde from 1.0.183 to 1.0.188 by @dependabot in #83
• Bump tokio from 1.31.0 to 1.32.0 by @dependabot in #84
• Bump chrono from 0.4.26 to 0.4.28 by @dependabot in #87
• Bump url from 2.4.0 to 2.4.1 by @dependabot in #86
• Bump serde_json from 1.0.104 to 1.0.105 by @dependabot in #85
• Bump clap from 4.4.1 to 4.4.2 by @dependabot in #88
• Bump thiserror from 1.0.47 to 1.0.48 by @dependabot in #89
• Bump actions/checkout from 3.6.0 to 4.0.0 by @dependabot in #91
• Bump actions/upload-artifact from 3.1.2 to 3.1.3 by @dependabot in #92
• Bump docker/build-push-action from 4.1.1 to 4.2.1 by @dependabot in #93
• Bump serde_json from 1.0.105 to 1.0.106 by @dependabot in #95
• Bump webpki from 0.22.0 to 0.22.1 by @dependabot in #97
• Bump docker/metadata-action from 4.6.0 to 5.0.0 by @dependabot in #98
• Bump docker/setup-buildx-action from 2.10.0 to 3.0.0 by @dependabot in #99
• Bump Swatinem/rust-cache from 2.6.2 to 2.7.0 by @dependabot in #100
• Bump docker/login-action from 2.2.0 to 3.0.0 by @dependabot in #101
• Bump clap from 4.4.2 to 4.4.4 by @dependabot in #104
• Bump serde_json from 1.0.106 to 1.0.107 by @dependabot in #105
• Add Helm Chart by @garryod in #42
• Bump docker/build-push-action from 4.2.1 to 5.0.0 by @dependabot in #102
• Add targeting service by @garryod in #69

Full Changelog: 0.0.4...0.0.5

Chimp Chomp Creates Queue

Chimp Chomp will now declare the specified queue when started.

Full Changelog: 0.0.3...0.0.4

Simpler Chimp CLI

Simplified the Chimp CLI by removing the username & password arguments. Plus some dependency updates

What's Changed

• Only pull LFS files when building release container by @garryod in #51
• Bump Swatinem/rust-cache from 2.2.1 to 2.5.1 by @dependabot in #43
• Bump docker/login-action from 2.1.0 to 2.2.0 by @dependabot in #45
• Bump actions-rs/toolchain from 1.0.6 to 1.0.7 by @dependabot in #46
• Bump clap from 4.3.15 to 4.3.19 by @dependabot in #48
• Bump thiserror from 1.0.43 to 1.0.44 by @dependabot in #49
• Bump serde from 1.0.171 to 1.0.175 by @dependabot in #50
• Bump actions/checkout from 3.5.2 to 3.5.3 by @dependabot in #44
• Bump opencv from 0.83.0 to 0.84.2 by @dependabot in #54
• Bump serde from 1.0.175 to 1.0.180 by @dependabot in #55
• Bump serde_json from 1.0.103 to 1.0.104 by @dependabot in #53
• Bump library/rust from 1.71.0-bullseye to 1.71.1-bullseye in /.devcontainer by @dependabot in #57
• Bump library/rust from 1.71.0-bullseye to 1.71.1-bullseye by @dependabot in #58
• Bump Swatinem/rust-cache from 2.5.1 to 2.6.0 by @dependabot in #59
• Bump opencv from 0.84.2 to 0.84.4 by @dependabot in #60
• Bump axum from 0.6.19 to 0.6.20 by @dependabot in #61
• Bump serde from 1.0.180 to 1.0.183 by @dependabot in #63

Full Changelog: 0.0.2...0.0.3

Improved Chimp CLI

Improved chimp CLI usability by adding RabbitMQ username & password fields

Initial Release

Initial release to produce a container for chimp_chomp