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30 followers · 28 following
  • Amsterdam

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: YOLOAchievement: Arctic Code Vault Contributor
BetaSend feedback

Highlights

  • Pro

Organizations

@NLeSC @DeepRank @matchms @vantage6 @nwo-strap @NPLinker @MyDigiTwinNL
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CunliangGeng/README.md

Hi, I am Cunliang Geng

Currently, I work at the Netherlands eScience Center, where I collaborate with scientists from universities and research institutes in the Netherlands, coding for open-source scientific projects in the life sciences and healthcare.

I am a research software engineer with a background in bioinformatics and computational biology. My passion lies in software engineering and machine learning, which I enjoy applying to solve scientific challenges.

🔥 Open-source projects I am working on:

  • Vantage6, a privacy preserving federated learning infrastructure for secure insight exchange.
  • NPLinker, a python framework for integrating multi-omics data to discover new microbial natural products.
  • STRAP, a microservice and tools to transform proprietary healthcare data into the standard FHIR format to facilitate self tracking for prevention and diagnosis of heart disease.

✅ Open-source projects I have contributed to:

  • DeepRank, a deep learning framework for data mining 3D protein-protein interfaces.
  • MatchMS, a python library for processing and similarity evaluation of mass spectrometry data.

Programming Languages

  • 🐍 Python
  • 🐒 TypeScript
  • 🐚 Shell script

Tooling

  • 🖥️ MacOS
  • 🌊 iTerm2
  • 🐠 ZSH + Oh My Zsh
  • 🦉 VS Code

Pinned

  1. DeepRank/deeprank DeepRank/deeprank Public archive

    This repository has been integrated in https://github.com/DeepRank/deeprank2

    Python 146 27

  2. DeepRank/iScore DeepRank/iScore Public

    iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines

    Python 26 11

  3. NPLinker/nplinker NPLinker/nplinker Public

    A python framework for data mining microbial natural products by integrating genomics and metabolomics data

    Jupyter Notebook 14 8

  4. matchms/matchms matchms/matchms Public

    Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

    Python 169 57

  5. nwo-strap/gamebus-fhir-layer nwo-strap/gamebus-fhir-layer Public

    FHIR layer for healthcare data platform GameBus and beyond

    Java 1

  6. vantage6 vantage6 Public

    Forked from vantage6/vantage6

    The main vantage6 repository: code for the central server, nodes, CLI and Python Client

    Python