nlp2fhir-obesity-phenotyping

FHIR-based EHR Phenotyping on Identification of Patients with Obesity and Multiple Comorbidities

System Architecture

SHAP Graphs for Interpretability

Visualizing the features that have a large contribution to the classification of each condition using SHAP Graphs.

Updated SHAP graphs for JBI R1 revision

• https://bd2konfhir.github.io/Obesity/SHAP_Graphs_R1.html

SHAP graphs for original JBI submission

• https://bd2konfhir.github.io/Obesity/SHAP1.html
• https://bd2konfhir.github.io/Obesity/SHAP2.html
• https://bd2konfhir.github.io/Obesity/SHAP3.html
• https://bd2konfhir.github.io/Obesity/SHAP4.html
• https://bd2konfhir.github.io/Obesity/SHAP5.html
• https://bd2konfhir.github.io/Obesity/SHAP6.html

Section Index File

• https://github.com/BD2KOnFHIR/nlp2fhir-obesity-phenotyping/blob/master/SECTIONS_Index_V9.csv