v0.15.2

0.15.2 - 2023-08-28

Bug Fixes

• Fix range threshold selection of algorithms (#1009)
• When run batch check if file extension is supported by loader (#1016)
• Do not allow to select and render corrupted batch plans (#1015)

Testing

• [Automatic] Constraints upgrades: imagecodecs, ipykernel, magicgui, psygnal, scipy, superqt, tifffile (#1011)
• [Automatic] Constraints upgrades: imageio, pyinstaller, tifffile (#1018)

Ci

• Use faster version of black (#1010)
• [pre-commit.ci] pre-commit autoupdate (#1013)

Changes:

• f98e32a add release notes
• 0180435 test: [Automatic] Constraints upgrades: imageio, pyinstaller, tifffile (#1018)
• 84b09d0 test: [Automatic] Constraints upgrades: imagecodecs, ipykernel, magicgui, psygnal, scipy, superqt, tifffile (#1011)
• df3663c fix: Do not allow to select and render corrupted batch plans (#1015)
• ae9a4d0 fix: When run batch check if file extension is supported by loader (#1016)
• c06d745 ci: [pre-commit.ci] pre-commit autoupdate (#1013)
• 45c385b ci: Use faster version of black (#1010)
• 82d705d fix: Fix range threshold selection of algorithms (#1009)

This list of changes was auto generated.

v0.15.1

0.15.1 - 2023-08-09

Bug Fixes

• Fix possible problem of double registration napari plugin in PartSeg bundle (#974)
• Bump OS versions for part of testing workflows. (#977)
• Bump os version for main tests workflow. (#979)
• Ensure that the module PartSegCore.channel_class is present in bundle (#980)
• Lower npe2 schema version to work with older napari version (#981)
• Generate test report per platfom (#978)
• Importing plugins in bundle keeping proper module names (#983)
• Fix napari repo workflow (#985)
• Fix bug in read tiff files with double Q in axes but one related to dummy dimmension (#992)
• Fix bug that lead to corupted state when saving calculation plan to excel file (#995)
• Enable python 3.11 test on CI, fix minor errors (#869)

Features

• Allow to save multiple napari image layers to single tiff file (#1000)
• Add option to export batch project with data (#996)

Testing

• [Automatic] Constraints upgrades: imageio, ipython, psygnal, scipy, sentry-sdk (#975)
• [Automatic] Constraints upgrades: h5py, imagecodecs, imageio, ipykernel, napari, numpy, pandas, pydantic, pyinstaller, scipy, sentry-sdk, tifffile, vispy (#986)
• [Automatic] Constraints upgrades: imagecodecs, sentry-sdk, tifffile (#997)
• [Automatic] Constraints upgrades: ipykernel, pydantic (#1002)
• [Automatic] Constraints upgrades: numpy, pygments, sentry-sdk, superqt (#1007)

Ci

• [pre-commit.ci] pre-commit autoupdate (#973)
• [pre-commit.ci] pre-commit autoupdate (#982)
• [pre-commit.ci] pre-commit autoupdate (#987)
• [pre-commit.ci] pre-commit autoupdate (#988)
• [pre-commit.ci] pre-commit autoupdate (#991)
• [pre-commit.ci] pre-commit autoupdate (#998)
• [pre-commit.ci] pre-commit autoupdate (#1004)
• Change markdown linter from pre-commit to mdformat (#1006)

Changes:

• 3594793 add release notes
• d9efd0b ci: [pre-commit.ci] pre-commit autoupdate (#1008)
• 3104c5c feat: Add option to export batch project with data (#996)
• 112c4fe test: [Automatic] Constraints upgrades: numpy, pygments, sentry-sdk, superqt (#1007)
• 10244c5 ci: Change markdown linter from pre-commit to mdformat (#1006)
• 9016e95 ci: [pre-commit.ci] pre-commit autoupdate (#1004)
• d77717b fix: Enable python 3.11 test on CI, fix minor errors (#869)
• 4fc34bf test: [Automatic] Constraints upgrades: ipykernel, pydantic (#1002)
• b38933b feat: allow to save multiple napari image layers to single tiff file (#1000)
• 1fb01af ci: [pre-commit.ci] pre-commit autoupdate (#998)

See More

• b03118c test: [Automatic] Constraints upgrades: imagecodecs, sentry-sdk, tifffile (#997)
• 6945822 fix: Fix bug that lead to corupted state when saving calculation plan to excel file (#995)
• 152a026 fix: Fix bug in read tiff files with double Q in axes but one related to dummy dimmension (#992)
• 3b08337 ci: [pre-commit.ci] pre-commit autoupdate (#991)
• dd3ca25 test: [Automatic] Constraints upgrades: h5py, imagecodecs, imageio, ipykernel, napari, numpy, pandas, pydantic, pyinstaller, scipy, sentry-sdk, tifffile, vispy (#986)
• aacc428 ci: [pre-commit.ci] pre-commit autoupdate (#988)
• 072f558 ci: [pre-commit.ci] pre-commit autoupdate (#987)
• da4c370 fix: Fix napari repo workflow (#985) [ #984 ]
• c7325d4 fix: importing plugins in bundle keeping proper module names (#983)
• 43e9bc2 fix: Generate test report per platfom (#978)
• 26b4c44 ci: [pre-commit.ci] pre-commit autoupdate (#982)
• 0de056e fix: Lower npe2 schema version to work with older napari version (#981)
• 18aa3ac fix: Ensure that the module PartSegCore.channel_class is present in bundle (#980)
• d8bdb93 fix: Bump os version for main tests workflow. (#979) [ #977 ]
• 889a728 fix: Bump OS versions for part of testing workflows. (#977) [ #976 ]
• d3a26d6 test: [Automatic] Constraints upgrades: imageio, ipython, psygnal, scipy, sentry-sdk (#975)
• 91c3c1d fix: Fix possible problem of double registration napari plugin in PartSeg bundle (#974)
• 0dff2f0 ci: [pre-commit.ci] pre-commit autoupdate (#973)

This list of changes was auto generated.

v0.15.0

0.15.0 - 2023-05-30

Bug Fixes

• Print all exceptions instead of the latest one in exception dialog (#799)
• Fix ROIExtractionResult __str__and __repr__ to use ROIExtractionResult not SegmentationResult (#810)
• Fix code to address changes in the napari repository (#817)
• Fix the problem with resize of multiline widgets (#832)
• Fix tox configuration to run all required tests (#840)
• Fix MSO step_limit description in GUI (#843)
• Fix redefined-while-unusedimport code for python 3.9.7 (#844)
• Fix warnings reported by Deepsource (#846)
• Ensure that "ROI" layer is in the proper place for proper visualization (#856)
• Fix tests of napari widgets (#862)
• Fix build of the bundle for a new psygnal release (#863)
• Fix minimal requirements pipeline (#877)
• Fix bug with generation of form for the model with hidden field (#920)
• Update pyinstaller configuration (#926)
• Use text icon, not pixmap icon in colormap and labels list (#938)
• Resolve warnings when testing custom save dialog. (#941)
• Add padding zeros for component num when load Mask seg file to ROI GUI (#944)
• Proper calculate bounds for watershed napari widget (#969)
• Fix bug in the wrong order of axis saved in napari contribution (#972)

Dependency

• [Automatic] Dependency upgrades (#824)
• [Automatic] Dependency upgrades (#828)
• [Automatic] Dependency upgrades: ipykernel, packaging (#838)
• [Automatic] Dependency upgrades: imageio, ipykernel, napari, numpy, sentry (#850)
• [Automatic] Dependency upgrades: imagecodecs, ipykernel, numpy, psygnal (#859)
• [Automatic] Dependency upgrades: pydantic, pygments, xlsxwriter (#874)
• [Automatic] Dependency upgrades: imageio, packaging, scipy, xlsxwriter (#878)
• [Automatic] Dependency upgrades: ipykernel, requests, sentry, xlsxwriter (#884)
• [Automatic] Dependency upgrades: h5py, imagecodecs, imageio, ipykernel, pandas, sentry, tifffile (#889)
• [Automatic] Dependency upgrades: ipython, pyqt5 (#893)
• [Automatic] Dependency upgrades: imageio, ipykernel, ipython, numpy, openpyxl, psygnal, pydantic, pyinstaller, pyqt5, scipy, sentry-sdk, tifffile, xlsxwriter (#897)
• [Automatic] Dependency upgrades: imageio, psygnal (#905)
• [Automatic] Dependency upgrades: ipython, magicgui, scipy, sentry-sdk, tifffile (#906)
• [Automatic] Dependency upgrades: imagecodecs, imageio, ipykernel, openpyxl, pydantic, pyinstaller, qtawesome, qtconsole, sentry-sdk, tifffile, xlsxwriter (#908)
• [Automatic] Dependency upgrades: imageio, ipykernel, ipython, pandas, psygnal, pydantic, pygments, pyinstaller, qtpy, sentry-sdk, tifffile (#917)

Documentation

• Update README and project metadata (#805)

Features

• Add PARTSEG_SENTRY_URL env variable support and basic documentation about error reporting (#802)
• Allow to see underlying exception when show warning caused by exception (#829)
• Add voxel size measurement and allow to overwrite voxel size in batch (#853)
• Add alpha support for Qt6 (#866)
• Add option to create projection alongside z-axis (#919)
• Add napari image custom representation for better error report via sentry (#861)
• Add import and export operation for labels and colormaps (#936)
• Implement napari widgets for colormap and lables control (#935)
• Add forget all button to multiple files widget (#942)
• Do not abort processing whole mask segmentation project during exception on single component (#943)
• Add distance based watersheed to flow methods (#915)
• Add napari widgets for all group of algoritms (#958)
• Add napari widget to copy lables along z-axis (#968)

Miscellaneous Tasks

• Improve ruff configuration, remove isort (#815)
• Use fail_on_no_env feature from tox-gh-actions (#842)
• Add python 3.11 to list of supported versions (#867)
• Disable python 3.11 test because of timeout (#870)
• Bump ruff to 0.0.218, remove flake8 from pre-commit (#880)
• Replace GabrielBB/xvfb-action@v1 by aganders3/headless-gui, part 2 (#887)
• Better minimal requirements test (#888)
• Improve regexp for proper generate list of packages in update report (#894)
• Add check for PR title (#933)
• Migrate from nme to local_migrator (#951)

Refactor

• Simplify and refactor github workflows. (#864)
• Better load Mask project in Roi Analysis (#921)
• Use more descriptive names in pylint: disable (#922)
• Remove pkg_resources usage as it is deprecated (#967)
• Convert napari plugin to npe2 (#966)

Security

• Bump peter-evans/create-pull-request from 4 to 5 (#928)

Styling

• Change default theme to dark, remove blinking windows on startup. (#809)

Testing

• [Automatic] Dependency upgrades: packaging, pyinstaller, pyopengl-accelerate, tifffile, xlsxwriter (#932)
• [Automatic] Constraints upgrades: fonticon-fontawesome6, imageio, numpy, partsegcore-compiled-backend, pygments, sentry-sdk (#937)
• [Automatic] Constraints upgrades: imageio, ipython, pandas, requests, sentry-sdk (#948)
• [Automatic] Constraints upgrades: ipython, nme, qtconsole, requests, sentry-sdk (#955)
• [Automatic] Constraints upgrades: ipykernel, local-migrator, pyinstaller, sentry-sdk, sympy (#957)
• [Automatic] Constraints upgrades: sentry-sdk, xlsxwriter (#959)
• [Automatic] Constraints upgrades: requests (#961)

Ci

• Update codecov configuration to wait on two reports before post information (#934)
• [pre-commit.ci] pre-commit autoupdate (#945)
• [pre-commit.ci] pre-commit autoupdate (#956)
• [pre-commit.ci] pre-commit autoupdate (#964)

Changes:

• 21658ec docs: Create release notes for PartSeg 0.15.0 (#971)
• 5a2957f fix: Fix bug in the wrong order of axis saved in napari contribution (#972)
• 2e2a0c0 test: [Automatic] Constraints upgrades: imageio, pandas, pydantic, pyopengl-accelerate, sentry-sdk, xlsxwriter (#970)
• ab50a72 feat: add napari widget to copy lables along z-axis (#968)
• bc9479d fix: Proper calculate bounds for watershed napari widget (#969)
• ce309a7 refactor: Convert napari plugin to npe2 (#966)
• cd9ba1f refactor: Remove pkg_resources usage as it is deprecated (#967)
• 7c17dd1 feat: Add napari widgets for all group of algoritms (#958)
• ff3be38 ci: [pre-commit.ci] pre-commit autoupdate (#964)
• 8d5c79f test: [Automatic] Constraints upgrades: requests (#961)

See More

• dbd57dd test: [Automatic] Constraints upgrades: sentry-sdk, xlsxwriter (#959)
• d62fcc4 feat: Add distance based watersheed to flow methods (#915)
• 74cb89a feat: Do not abort processing whole mask segmentation project during exception on single component (#943)
• 19d82a3 test: [Automatic] Constraints upgrades: ipykernel, local-migrator, pyinstaller, sentry-sdk, sympy (#957)
• 0f4ae26 ci: [pre-commit.ci] pre-commit autoupdate (#956)
• 9f5780a chore: Migrate from nme to local_migrator (#951)
• 3c39384 test: [Automatic] Constraints upgrades: ipython, nme, qtconsole, requests, sentry-sdk (#955)
• f436158 test: [Automatic] Constraints upgrades: imageio, ipython, pandas, requests, sentry-sdk (#948)
• 13e6d12 ci: [pre-commit.ci] pre-commit autoupdate (#945)
• 17eb812 test: [Automatic] Constraints upgrades: fonticon-fontawesome6, imageio, numpy, partsegcore-compiled-backend, pygments, sentry-sdk (#937)
• ba6d87e fix: Add padding zeros for component num when load Mask seg file to ROI GUI (#944)
• 1929ad8 fix: Resolve warnings when testing custom save dialog. (#941)
• 962ef52 feat: Add forget all button to multiple files widget (#942)
• 0369b34 feat: Implement napari widgets for colormap and lables control (#935)
• b2ccddd fix: Use text icon, not pixmap icon in colormap and labels list (#938)
• 44ce9df feat: Add import and export operation for labels and colormaps (#936)
• ad6bda2 test: [Automatic] Dependency upgrades: packaging, pyinstaller, pyopengl-accelerate, tifffile, xlsxwriter (#932)
• cee4aa6 ci: Update codecov configuration to wait on two reports before post information (#934)
• 8663c39 chore: Add check for PR title (#933)
• f732d24 dep: [Automatic] Dependency upgrades: imageio, ipykernel, ipython, pandas, psygnal, pydantic, pygments, pyinstaller, qtpy, sentry-sdk, tifffile (#917)
• 6b5f2ef Protect from saving when mask or segmentation is absent (#931)
• 1d1eb8e build(deps): bump peter-evans/create-pull-request from 4 to 5 (#928) [ evans/create-pull-request#1170, evans/create-pull-request#1792, evans/create-pull-request#1610, evans/create-pull-request#1324, evans/create-pull-request#1318, #1792, #1803, #1801, #1802, #1800, #1799, #1768, #1767, #1766, #1765 ]
• 19964a7...

v0.14.6: fix: Fix bug when loading already created project causing hide of ROI…

0.14.6 - 2022-11-13

Bug Fixes

• Fix bug when loading already created project causing hide of ROI layer (#787)

Features

• Improve error message if segmentation do not fit in ROI Mask (#788)

Changes:

• 994088d fix: Fix bug when loading already created project causing hide of ROI layer (#787)
• 426b918 Improve error message if segmentation do not fit in ROI Mask (#788)

This list of changes was auto generated.

v0.14.5

0.14.5 - 2022-11-09

Bug Fixes

• Fix scalebar color (#774)
• Fix bug when saving segmentation parameters in mask analysis (#781)
• Fix multiple errors related to loading a new file in interactive mode (#784)

Features

• Add an option for ensuring type in EventedDict and use it to validate profiles structures (#776)
• Add an option to create an issue from the error report dialog (#782)
• Add option for the multiline field in algorithm parameters (#766)

Refactor

• Optimize CLI actions (#772)
• Clean warnings about threshold methods (#783)

Build

• Bump chanzuckerberg/napari-hub-preview-action from 0.1.5 to 0.1.6 (#775)

Changes:

• 7510307 Update changelog (#786)
• 37813e5 fix: Fix multiple error related to loading new file in interactive mode (#784)
• 3906d27 refactor: Clean warnings about threshold methods (#783)
• 4b836c1 feat: Add option for multiline field in algorithm parameters (#766)
• d783ed9 feat: Add option to create issue from error report dialog (#782)
• fa1a6d1 fix: Fix bug when saving segmentation prameters in mask analysis (#781)
• 42b1d71 add roi and mask aliases (#780)
• 9fca75a [pre-commit.ci] pre-commit autoupdate (#778)
• 1e0c7f4 feat: Add option for ensure type in EventedDict and use it to validate profiles structures (#776)
• 691e800 build(deps): bump chanzuckerberg/napari-hub-preview-action from 0.1.5 to 0.1.6 (#775)

See More

• 6ed8e46 fix: Fix scalebar color (#774)
• 37b4578 refactor: optimize CLI actions (#772)
• 944ade4 [pre-commit.ci] pre-commit autoupdate (#773)

This list of changes was auto generated.

v0.14.4

0.14.4 - 2022-10-24

Bug Fixes

• Fix get_theme calls to prepare for napari 0.4.17 (#729)
• Fix sentry tests (#742)
• Fix reporting error in load settings from the drive (#725)
• Fix saving pipeline from GUI (#756)
• Fix profile export/import dialogs (#761)
• Enable the "Compare" button if ROI is available (#765)
• Fix bug in cut with ROI to not make black artifacts (#767)

Features

• Load alternatives labeling when opening PartSeg projects in napari (#731)
• Add option to toggle scale bar (#733)
• Allow customizing the settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
• Separate recent algorithms from general application settings (#752)
• Add multiple otsu as threshold method with selection range of components (#710)
• Add function to load components from Mask Segmentation with a background in ROI Analysis (#768)

Miscellaneous Tasks

• Prepare pyinstaller configuration for napari 0.4.17 (#748)
• Add ruff linter (#754)

Testing

• Add new build and inspect wheel action (#747)

Build

• Bump actions/checkout from 2 to 3 (#716)
• Bump actions/download-artifact from 1 to 3 (#709)

Changes:

• 9e742fc Prepare 0.14.4 release (#770)
• a1f8bba feat: Add function to load components from Mask Segmentaion with background in ROI Analysis (#768)
• 9986dc4 fix: Fix bug in cut with roi to do not make black artifacts (#767)
• 53ec234 fix: Enable compare button if ROI is avaliable (#765)
• fceb043 fix: Fix profile export/import dialogs (#761)
• 214320e [pre-commit.ci] pre-commit autoupdate (#760)
• 7f59296 Report if in main thread when auto report errors is enabled
• 23f8ce4 fix: Fix saving pipeline from GUI (#756)
• a40de4e chore: Add ruff linter (#754)
• cb16b0e feat: Add multiple otsu as threshold method with selection range of components (#710)

See More

• 54958d1 feat: Separate recent algorithms from general application settings (#752)
• ef43db3 bugfix: Fix reporting error in load settings from drive (#725)
• eab244f feat: Allow customize settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
• fd6e600 chore: Prepare pyinstaller configuration for napari 0.4.17 (#748)
• ce084a3 test: Add new build and inspect wheel action (#747)
• 6b6dbdd [pre-commit.ci] pre-commit autoupdate (#737)
• 99aaaec Ignore error when locale.setlocale fails with locale.Error (#743)
• 609c542 bugfix: fix sentry tests (#742)
• de58c31 build(deps): bump actions/download-artifact from 1 to 3 (#709)
• 531e0f6 feat: Add option to toggle scale bar (#733)
• 5e765df feat: Load alternatives labeling when open PartSeg projects in napari (#731)
• 87dab17 fix: Fix get_theme calls to prepare for napari 0.4.17 (#729)
• a8697a2 Bump bundle requirements (#728)
• 43f27ca [pre-commit.ci] pre-commit autoupdate (#721)
• 3d5695f Increase max value in SearchLabel widget (#715)
• 50c69e4 [pre-commit.ci] pre-commit autoupdate (#718)
• 0e99126 Bump packages versions for bundle (#717)
• da129c9 build(deps): bump actions/checkout from 2 to 3 (#716)
• 1002409 Fix for napari repo, prepare for napari 0.4.17 (#712)
• 3961653 [pre-commit.ci] pre-commit autoupdate (#700)
• 7bb4826 Add missing requirements to setup.cfg (#696)
• 08696b8 fix typos

This list of changes was auto generated.

v0.14.3

0.14.3

Bug Fixes

• Fix lack of rendering ROI when load image from segmentation (#694)
• Fix running ROI extraction from napari widget (#695)
• Delay setting image if an algorithm is still running (#627)
• Wrong error report when no component is found in restartable segmentation algorithm. (#633)
• Fix the process of building documentation (#653)

Refactor

• Clean potential vulnerabilities (#630)

Testing

• Add more tests for common GUI elements (#622)
• Report coverage per package. (#639)
• Update conda environment to not use PyQt5 in test (#646)
• Add tests files to calculate coverage (#655)

Changes:

• 41e6ff6 update changelog
• ca3f1cd Fix running segmentation from napari widget (#695)
• b7c185f Fix lack of rendering ROI when load image from segmentation (#694)
• f881a8a Bump bundle requirements versions (#693)
• 8cce4bc [pre-commit.ci] pre-commit autoupdate (#689)
• 515710c [pre-commit.ci] pre-commit autoupdate (#685)
• 14294f7 [pre-commit.ci] pre-commit autoupdate (#670)
• 887f6e4 Bump requirements (#676)
• 2f04409 Fix failing CI (#673)
• 1993c89 allow manual dispatch tests

See More

• 566ad98 build(deps): bump pyinstaller from 5.1 to 5.2 in /requirements (#667)
• bc9b87b [pre-commit.ci] pre-commit autoupdate (#666)
• ad36688 build(deps): bump mahotas from 1.4.12 to 1.4.13 in /requirements (#662)
• a1edc33 build(deps): bump lxml from 4.9.0 to 4.9.1 in /requirements (#665)
• 13b151d build(deps): bump numpy from 1.22.4 to 1.23.0 in /requirements (#660)
• d3a5a35 build(deps): bump sentry-sdk from 1.5.12 to 1.6.0 in /requirements (#659)
• ee0c304 test: Add tests files to calcualate coverage (#655)
• d6e1a91 Bump bundle requirements (#654)
• 2f14925 fix: Fix process of build documentation (#653)
• 33ac6a0 build(deps): bump pyqt5 from 5.15.6 to 5.15.7 in /requirements (#652)
• 2e68055 [pre-commit.ci] pre-commit autoupdate (#650)
• fecf346 build(deps): bump actions/setup-python from 3 to 4 (#648)
• 6dd2096 build(deps): bump requests from 2.27.1 to 2.28.0 in /requirements (#647)
• bd23f87 [pre-commit.ci] pre-commit autoupdate (#642)
• 1c87c66 test: Update conda environment to not use PyQt5 in test (#646)
• 84fea4e test: Report coverage per package. (#639)
• 7e3b967 build(deps): bump codecov/codecov-action from 1 to 3 (#637)
• ce90828 Fix pre tests (#635)
• cc8412a build(deps): bump tifffile from 2022.4.28 to 2022.5.4 in /requirements (#619)
• c79f1f3 fix: Wrong error report whe no component is found in restatrtable segmentation algorithm. (#633)
• 1453051 refactor: clean potential vulnerabilities (#630)
• 1d6ef79 build(deps): bump pyinstaller from 5.0.1 to 5.1 in /requirements (#629)
• ba0e8dd build(deps): bump qtpy from 2.0.1 to 2.1.0 in /requirements (#613)
• c7cfebb Test if pyinstaller bundle work for --pre tests (#628)
• 0a38fc6 test: Add more tests for common GUI elements (#622) [ #623 ]
• fdc5e37 fix: Delay setting image if an algorithm is still running (#627)
• 0498f17 Add issue templates (#626)
• 9caf476 [pre-commit.ci] pre-commit autoupdate (#624)

This list of changes was auto generated.

v0.14.2

0.14.2

Bug Fixes

• Fix bug in save label colors between sessions (#610)
• Register PartSeg plugins before starting napari widgets. (#611)
• Mouse interaction with components works again after highlight. (#620)

Refactor

• Limit test run (#603)
• Filter and solve warnings in tests (#607)
• Use QAbstractSpinBox.AdaptiveDecimalStepType in SpinBox instead of hardcoded bounds (#616)
• Clean and test PartSeg.common_gui.universal_gui_part (#617)

Testing

• Speedup test by setup cache for pip (#604)
• Setup cache for azure pipelines workflows (#606)

Changes:

• a9e7539 doc: Update changelog (#621)
• a269888 fix: Mouse interaction with components work again after highlight. (#620)
• 6c0701d build(deps): bump sentry-sdk from 1.5.10 to 1.5.11 in /requirements (#615)
• da5e19f refactor: clean and test PartSeg.common_gui.universal_gui_part (#617) [ #618 ]
• 03d9c1f fix: Register PartSeg plugins before start napari widgets. (#611)
• e2daa4c refactor: Use QAbstractSpinBox.AdaptiveDecimalStepType in SpinBox instead of hardcoded bounds (#616)
• 3f9c551 [pre-commit.ci] pre-commit autoupdate (#612)
• cbf4ae7 test: Setup cache for azure pipelines workflows (#606)
• 1528ab2 fix: Fix bug in save label colors between sessions (#610)
• 6e5fee8 refactor: Filter and solve warnings in tests (#607)

See More

• 270b9e0 test: Speedup test by setup cache for pip (#604)
• 3786918 refactor: Limit test run (#603)
• 2007b69 bump requirements (#602)

This list of changes was auto generated.

v0.14.1

0.14.1

Bug Fixes

• Update build wheels and sdist to have proper version tag (#583)
• Fix removing the first measurement entry in the napari Measurement widget (#584)
• Fix compatibility bug for conda Pyside2 version (#595)
• Error when synchronization is loaded, and newly loaded image has different dimensionality than currently loaded. (#598)

Features

• Use pygments for coloring code in exception window (#591)
• Add option to calculate Measurement per Mask component (#590)

Refactor

• Refactor the creation batch plan widgets and add tests for it (#587)
• Drop napari bellow 0.4.12 (#592)
• Update the order of ROI Mask algorithms to be the same as in older PartSeg versions (#600)

Changes:

• 363ed39 refactor: Update the order of ROI Mask algorithms to be the same as in older PartSeg versions (#600)
• 90cca9b update changelog (#599)
• fe948dd fix: Error when synchronization is loaded and new iloaded image has different dimensionality than currently loaded. (#598)
• e9018e9 fix: Fix compatybility bug for conda Pyside2 version (#595)
• 6c6ccc4 feat: Add option to calculate Measurement per Mask component (#590)
• d519d3a feat: Use pygments for coloring code in exception window (#591)
• 3dcadf8 build(deps): bump pyinstaller from 4.10 to 5.0 in /requirements (#586)
• dc52158 refactor: Drop napari bellow 0.4.12 (#592)
• 2c26399 refactor: Refactor the create batch plan widgets and add test for it (#587)
• 7a86ed2 build(deps): bump simpleitk from 2.1.1 to 2.1.1.2 in /requirements (#589)

See More

• 39f88a9 fix: Fix removing the first measurement entry in the napari Measurement widget (#584)
• adf87c9 fix: Update build wheels and sdist to have proper version tag (#583)
• a15cdeb build(deps): bump partsegcore-compiled-backend from 0.13.11 to 0.14.0 in /requirements (#582)

This list of changes was auto generated.

v0.14.0

0.14.0

Bug Fixes

• Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• Add access by operator [] to pydantic.BaseModel base structures for keeping backward compatibility (#579)

Features

• Allow setting zoom factor from the interface in Search Label napari plugin (#538)
• Add controlling of zoom factor of search ROI in main GUI (#540)
• Better serialization mechanism allow for declaration data structure migration locally (#462)
• Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• Add option to extract measurement profile or ROI extraction profile from the batch plan (#568)
• Allow import calculation plan from batch result excel file (#567)
• Improve error reporting when failing to deserialize data (#574)
• Launch PartSeg GUI from napari #581

Refactor

• Store PartSegImage.Image channels as separated arrays (#554)
• Remove deprecated modules. (#429)
• Switch serialization backend to nme (#569)

Testing

• Add test of creating AboutDialog (#539)
• Setup test for python 3.10. Disable class_generator test for this python (#570)

Changes:

• 03f60b4 doc: Update changelog and add new badges to readme (#580)
• 3d6f9b1 [pre-commit.ci] pre-commit autoupdate (#572)
• 0f31f06 feat: Launch PartSeg GUI from napari (#581)
• e31d28d bugfix: Add access by operator [] to pydantic.BaseModel base structures for keep backward compatybility (#579)
• c0db122 feat: Improve error reporting when fail to deserialize data (#574)
• 607e4d2 Limit simpleitk versions (#577)
• 22b207f test: Setup test for python 3.10. Disable class_generator test for this python (#570)
• 908d9ba refactor: Switch serialization backen to nme (#569)
• 97e32b2 feat: Allow import calculation plan from batch result excel file (#567)
• 22bbdec remove obsolete console_script

See More

• 1216219 feat: Add option to extract meaurement profile or roi extraction profile from batch plan (#568)
• 507beca build(deps): bump sentry-sdk from 1.5.7 to 1.5.8 in /requirements (#557)
• 7633038 feat: Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• 5b9576c fix: Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• 03136d6 Clean azure pipelines configuration (#566)
• 743d984 [pre-commit.ci] pre-commit autoupdate (#558)
• 4979a6d Remove commented out code (#563)
• 56fd22d refactor: Remove deprecated modules. (#429)
• ec50e86 build(deps): bump sympy from 1.10 to 1.10.1 in /requirements (#556)
• b08e0bd feat: Better serialization mechanism allow for declaration data structure migration locally (#462)
• fc651ed build(deps): bump tifffile from 2022.2.9 to 2022.3.25 in /requirements (#562)
• a99582e build(deps): bump sphinx from 4.4.0 to 4.5.0 in /requirements (#561)
• f687b82 refactor: store PartSegImage.Image channels as separated arrays (#554)
• df7c54d [pre-commit.ci] pre-commit autoupdate (#552)
• 5e2a7b8 Bump bundle requirements (#548)
• 2440e1b build(deps): bump pillow from 9.0.0 to 9.0.1 in /requirements (#549)
• 0e8fc0f build(deps): bump pyinstaller from 4.8 to 4.10 in /requirements (#545)
• 33dac4f Add test workflow to find deprecations in napari main repository (#542)
• 099b03f feat: Add controling of zoom factor of search ROI in main GUI (#540)
• b81fb09 test: Add test of creating AboutDialog (#539)
• b0f29ad feat: Allow to set zoom factor from interface in Search Label napari plugin (#538)
• 79869cf prepare test for napari 0.4.14 (#517)
• 31e0127 Apply non esentail parts of better serialization PR #462 (#533)
• dd95a47 Fix deprecations (#531)
• d1a64ee build(deps): bump sentry-sdk from 1.5.3 to 1.5.4 in /requirements (#515)
• ca96437 build(deps): bump qtpy from 2.0.0 to 2.0.1 in /requirements (#522)
• ecedd96 build(deps): bump tifffile from 2021.11.2 to 2022.2.2 in /requirements (#523)
• 3daf45d build(deps): bump numpy from 1.22.1 to 1.22.2 in /requirements (#524)
• 979d6f6 build(deps): bump oiffile from 2021.6.6 to 2022.2.2 in /requirements (#521)
• f47576b [pre-commit.ci] pre-commit autoupdate (#520)
• 4fe701b Not use GabrielBB/xvfb-action on non linux systems (#519)
• d7dfdbb build(deps): bump pandas from 1.3.5 to 1.4.0 in /requirements (#514)
• 5ad4483 build(deps): bump ipython from 8.0.0 to 8.0.1 in /requirements (#513)
• cf69bc0 build(deps): bump sentry-sdk from 1.5.2 to 1.5.3 in /requirements (#512)

This list of changes was auto generated.