{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":328708157,"defaultBranch":"master","name":"GECCO","ownerLogin":"zellerlab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2021-01-11T15:29:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/43535691?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1709049877.0","currentOid":""},"activityList":{"items":[{"before":"c7c16d208c6099128ed8cd75cfb61e4b04bdea61","after":"ce67af97534b283d183eb7bc3e599fbf40bb5788","ref":"refs/heads/master","pushedAt":"2024-05-08T11:26:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use SPDX license qualifier in `setup.cfg` [ci skip]","shortMessageHtmlLink":"Use SPDX license qualifier in setup.cfg [ci skip]"}},{"before":"b29f5030ebdd9f867f923478f1e6ee1723e9e304","after":"c7c16d208c6099128ed8cd75cfb61e4b04bdea61","ref":"refs/heads/master","pushedAt":"2024-03-21T14:59:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix issue with `gecco convert` when given a relative path","shortMessageHtmlLink":"Fix issue with gecco convert when given a relative path"}},{"before":"e7a01329a44f72a9b49e23bce99a8c0b17c5bc53","after":"b29f5030ebdd9f867f923478f1e6ee1723e9e304","ref":"refs/heads/master","pushedAt":"2024-03-21T12:26:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add an error in `gecco convert` when input is not a folder","shortMessageHtmlLink":"Add an error in gecco convert when input is not a folder"}},{"before":"6359601d51f3328887c636554a17c7dce2acbdd8","after":"e7a01329a44f72a9b49e23bce99a8c0b17c5bc53","ref":"refs/heads/master","pushedAt":"2024-02-27T16:37:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Downgrade Sphinx version used to build documentation to `v5.0`","shortMessageHtmlLink":"Downgrade Sphinx version used to build documentation to v5.0"}},{"before":"968027f2e3a379c5d8657f10472896353bb54af7","after":"6359601d51f3328887c636554a17c7dce2acbdd8","ref":"refs/heads/master","pushedAt":"2024-02-27T16:31:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use `sphinxcontrib-jquery` to load JQuery in docs [ci skip]","shortMessageHtmlLink":"Use sphinxcontrib-jquery to load JQuery in docs [ci skip]"}},{"before":"b924649c8757739b0f62e8d82081739258929112","after":"968027f2e3a379c5d8657f10472896353bb54af7","ref":"refs/heads/master","pushedAt":"2024-02-27T16:18:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Mark support for Python 3.12 in `setup.cfg` [ci skip]","shortMessageHtmlLink":"Mark support for Python 3.12 in setup.cfg [ci skip]"}},{"before":"8cdf0560f2aa282bf306fd0b8601b37efda8ae04","after":"b924649c8757739b0f62e8d82081739258929112","ref":"refs/heads/master","pushedAt":"2024-02-27T16:08:57.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.9.10","shortMessageHtmlLink":"Release v0.9.10"}},{"before":"a86816f31af95c1fae598c42a5d164bbc6bf492b","after":"8cdf0560f2aa282bf306fd0b8601b37efda8ae04","ref":"refs/heads/master","pushedAt":"2024-02-27T16:04:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.9.10","shortMessageHtmlLink":"Release v0.9.10"}},{"before":"a4351e5c4d9df3133b2f212838b1a910be289e60","after":null,"ref":"refs/heads/laura","pushedAt":"2024-02-27T15:51:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"}},{"before":"f84dda5a1c58dd9067d2544b31bc40bf967d1ca5","after":"a86816f31af95c1fae598c42a5d164bbc6bf492b","ref":"refs/heads/master","pushedAt":"2024-02-27T15:51:04.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fixed how overlapping genes are identified during training (#15)","shortMessageHtmlLink":"Fixed how overlapping genes are identified during training (#15)"}},{"before":"422fe7d71126742ae5548912ae05c2bfa44ebe1a","after":"f84dda5a1c58dd9067d2544b31bc40bf967d1ca5","ref":"refs/heads/master","pushedAt":"2024-02-27T15:50:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Report sequences with uni-valued labels when training","shortMessageHtmlLink":"Report sequences with uni-valued labels when training"}},{"before":"5cc4280b6ade430f14c8e972bc4dd102e0ce8cbc","after":"422fe7d71126742ae5548912ae05c2bfa44ebe1a","ref":"refs/heads/master","pushedAt":"2024-02-26T20:13:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update CI to test for Python 3.12","shortMessageHtmlLink":"Update CI to test for Python 3.12"}},{"before":"91fe34d422c1326b781974e81ed6e595a01ffaf7","after":"5cc4280b6ade430f14c8e972bc4dd102e0ce8cbc","ref":"refs/heads/master","pushedAt":"2024-02-26T20:10:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Relax `statsmodels` requirement to support older Python","shortMessageHtmlLink":"Relax statsmodels requirement to support older Python"}},{"before":"8ebcdc264fe68bd1de74c2fa1146b21002bd7e51","after":"91fe34d422c1326b781974e81ed6e595a01ffaf7","ref":"refs/heads/master","pushedAt":"2024-02-26T20:07:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Relax `polars` requirement to support older Python","shortMessageHtmlLink":"Relax polars requirement to support older Python"}},{"before":null,"after":"a4351e5c4d9df3133b2f212838b1a910be289e60","ref":"refs/heads/laura","pushedAt":"2024-02-26T18:42:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"lmc297","name":"Laura Carroll","path":"/lmc297","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/15973701?s=80&v=4"},"commit":{"message":"Fixed how overlapping genes are identified during training","shortMessageHtmlLink":"Fixed how overlapping genes are identified during training"}},{"before":"f4f3964d9392b00dedcb50653484d699e820eab9","after":"8ebcdc264fe68bd1de74c2fa1146b21002bd7e51","ref":"refs/heads/master","pushedAt":"2024-02-26T14:46:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Bump `Sphinx` documentation dependency to `v7`","shortMessageHtmlLink":"Bump Sphinx documentation dependency to v7"}},{"before":"4bc555e9fb9430b9f7c768582e4080ef0ea98894","after":"f4f3964d9392b00dedcb50653484d699e820eab9","ref":"refs/heads/master","pushedAt":"2024-02-26T13:29:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Bump `statsmodels` optional dependency to `v0.14`","shortMessageHtmlLink":"Bump statsmodels optional dependency to v0.14"}},{"before":"ed891b4c5dcad3fcd3e6dd1782de50e57fa97dfe","after":"4bc555e9fb9430b9f7c768582e4080ef0ea98894","ref":"refs/heads/master","pushedAt":"2024-02-20T13:09:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix refactor issue in cluster table loading","shortMessageHtmlLink":"Fix refactor issue in cluster table loading"}},{"before":"0edf66b891bf570043299986a21b864edbda45ce","after":"ed891b4c5dcad3fcd3e6dd1782de50e57fa97dfe","ref":"refs/heads/master","pushedAt":"2024-02-03T16:55:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update use of `ProgressReader` with `zopen` to correct progress bars for compressed files","shortMessageHtmlLink":"Update use of ProgressReader with zopen to correct progress bars …"}},{"before":"ce907855d18a1957ffe8f3d9f39b8ef400a32013","after":"0edf66b891bf570043299986a21b864edbda45ce","ref":"refs/heads/master","pushedAt":"2023-11-23T09:48:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.9.9","shortMessageHtmlLink":"Release v0.9.9"}},{"before":"7c68489b392e71599fa769496d3441dde6732822","after":"ce907855d18a1957ffe8f3d9f39b8ef400a32013","ref":"refs/heads/master","pushedAt":"2023-09-17T14:56:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Bump required `pyrodigal` dependency to `v3.0.0`","shortMessageHtmlLink":"Bump required pyrodigal dependency to v3.0.0"}},{"before":"3d22f8a748ca48a7472150449daf9e085f9a0cad","after":"7c68489b392e71599fa769496d3441dde6732822","ref":"refs/heads/master","pushedAt":"2023-09-08T09:03:48.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Bump required `pyhmmer` dependency to `v0.10.0`","shortMessageHtmlLink":"Bump required pyhmmer dependency to v0.10.0"}},{"before":"96b7a0f2bc199511c623e3ed48619e41f6fb869c","after":"3d22f8a748ca48a7472150449daf9e085f9a0cad","ref":"refs/heads/master","pushedAt":"2023-06-29T20:59:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add missing `bz2` import to `gecco._meta`","shortMessageHtmlLink":"Add missing bz2 import to gecco._meta"}},{"before":"113df99330e894d2ff5fefc26196f29492ff32c1","after":"96b7a0f2bc199511c623e3ed48619e41f6fb869c","ref":"refs/heads/master","pushedAt":"2023-06-24T16:43:53.440Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Rewrite I/O handling to support inputs compressed with `gzip`, `bzip2`, `lz4` or `xz`","shortMessageHtmlLink":"Rewrite I/O handling to support inputs compressed with gzip, `bzip2…"}},{"before":"ac670412f69b3bacb726ee55191ed113f89e935f","after":"113df99330e894d2ff5fefc26196f29492ff32c1","ref":"refs/heads/master","pushedAt":"2023-06-09T11:13:45.899Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.9.8","shortMessageHtmlLink":"Release v0.9.8"}},{"before":"6515d3ff89947f506cf381c8fffc255763e76074","after":"ac670412f69b3bacb726ee55191ed113f89e935f","ref":"refs/heads/master","pushedAt":"2023-06-09T09:50:49.810Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use `importlib-resources` in Python version before 3.9","shortMessageHtmlLink":"Use importlib-resources in Python version before 3.9"}},{"before":"6bef782520cb39540b767ad6d361ef1a68ae9938","after":"6515d3ff89947f506cf381c8fffc255763e76074","ref":"refs/heads/master","pushedAt":"2023-06-09T09:39:10.268Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix GitLab-CI pipeline crashing because of undeclared dependency","shortMessageHtmlLink":"Fix GitLab-CI pipeline crashing because of undeclared dependency"}},{"before":"bba48571507a194a2056f7dd52ef61bf130dbf73","after":"6bef782520cb39540b767ad6d361ef1a68ae9938","ref":"refs/heads/master","pushedAt":"2023-06-09T09:37:02.078Z","pushType":"push","commitsCount":5,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update internal data loading to new `importlib.resources.files` API","shortMessageHtmlLink":"Update internal data loading to new importlib.resources.files API"}},{"before":"2e554303bff93e6a058d813bb52849c93be5164b","after":"bba48571507a194a2056f7dd52ef61bf130dbf73","ref":"refs/heads/master","pushedAt":"2023-05-26T11:58:58.852Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.9.7","shortMessageHtmlLink":"Release v0.9.7"}},{"before":"04e813997f878f5292e0b52a239027dccbc4d9ed","after":"2e554303bff93e6a058d813bb52849c93be5164b","ref":"refs/heads/master","pushedAt":"2023-05-17T12:42:07.219Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix progress bars for multiple HMMs annotation with whitelist in CLI","shortMessageHtmlLink":"Fix progress bars for multiple HMMs annotation with whitelist in CLI"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAERItkhgA","startCursor":null,"endCursor":null}},"title":"Activity · zellerlab/GECCO"}