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Additional improvements to adata_to_multivec_zarr function #320

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keller-mark opened this issue Feb 9, 2024 · 0 comments
Open

Additional improvements to adata_to_multivec_zarr function #320

keller-mark opened this issue Feb 9, 2024 · 0 comments
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feature New feature or request

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@keller-mark
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  • Use all chromosomes present in input dataframe.
  • Emit warning about chromosomes that are contained in assembly but not in the input dataframe to catch cases in which users are using wrong assembly (and chr prefix differences).
  • Reindex in_bins_df prior to for loop
    for chr_name, chr_len in chrom_name_to_length.items():
    to ensure the index values are integers in range(in_bins_df.shape[0])
@keller-mark keller-mark added the feature New feature or request label May 15, 2024
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