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May 30, 2024 - Python
snakemake
Here are 552 public repositories matching this topic...
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
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May 30, 2024 - Python
The CGR GWAS QC processing workflow.
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May 30, 2024 - Python
🦠📇 Compare prokaryotic genomic assemblies
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May 30, 2024 - Python
Estimación de turbidez en el agua a la entrada de la planta de tratamiento de SAMEEP, utilizando los productos Sentinel-2 MSI L2A y aprendizaje automático.
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May 30, 2024 - HTML
Snakemake workflow for orchestration of the LEGEND simulation chain
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May 30, 2024 - Python
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
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May 30, 2024 - Python
PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
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May 30, 2024 - Python
This is the development home of the workflow management system Snakemake. For general information, see
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May 29, 2024 - HTML
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May 29, 2024 - Python
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
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May 29, 2024 - Jupyter Notebook
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
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May 29, 2024 - Python
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
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May 28, 2024 - Python
😎 This repository contains scripts that I wrote for data analysis and visualization.
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May 28, 2024 - Jupyter Notebook
Tool for fully-automated inference of species trees from raw genome assemblies
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May 28, 2024 - Python
A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by the R package Seurat.
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May 27, 2024 - R
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
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May 27, 2024 - R
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