Read and write Neuroglancer datasets programmatically.

Visualize, share and annotate your large 3D images online

Automated batch processing for tissue microscopy image data

Segment Anything for Microscopy

Command-line utilities to process images from the PerkinElmer's Operetta microscope

Particle tracking by solving linear assignment problem.

Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.

Distributed segmentation for bio-image-analysis

This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

Simple GUI tool based on tkinter to enable coordinate transformation between TEM and LM images.

This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.

an ImageJ toolset for EM image analysis

Microsnoop: A generalist tool for microscopy image representation

Utils and convenience functions for large-scale bio-image analysis.

This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

Semantic segmentation on Electron Microscopy dataset using U-Net

RESTful API for myovision project

A python library for image stitching with distortion correction

napari plugin for analyzing fluorescence-labeled proteins redistribution