{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":116881538,"defaultBranch":"master","name":"jetstream","ownerLogin":"tgen","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-01-09T23:14:41.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/828448?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1705003469.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"f83be3f81989f8daddfe64d9a81deaffd1142837","ref":"refs/heads/dependabot/pip/jinja2-3.1.3","pushedAt":"2024-01-11T20:04:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump jinja2 from 3.1.2 to 3.1.3\n\nBumps [jinja2](https://github.com/pallets/jinja) from 3.1.2 to 3.1.3.\n- [Release notes](https://github.com/pallets/jinja/releases)\n- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)\n- [Commits](https://github.com/pallets/jinja/compare/3.1.2...3.1.3)\n\n---\nupdated-dependencies:\n- dependency-name: jinja2\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump jinja2 from 3.1.2 to 3.1.3"}},{"before":"0823bae3acc8ca9e96fc2f05e2edc3ed6241ddd3","after":"f9594f754a24b4c612655cac84bcacc776d2c29c","ref":"refs/heads/master","pushedAt":"2023-11-28T23:24:58.000Z","pushType":"pr_merge","commitsCount":22,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"},"commit":{"message":"Merge pull request #172 from tgen/develop\n\nJetstream v1.7.4","shortMessageHtmlLink":"Merge pull request #172 from tgen/develop"}},{"before":"a3f61853ee0dc8ad5266c334b3229b090dd3865c","after":null,"ref":"refs/heads/v1.7.4_release_doc","pushedAt":"2023-11-28T22:58:41.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"917996730523c3f5229753e23662d204ecea81fb","after":"b0a34e253733bd5d780ef3f1aad85d8befe02ceb","ref":"refs/heads/develop","pushedAt":"2023-11-28T22:58:40.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Merge pull request #171 from tgen/v1.7.4_release_doc","shortMessageHtmlLink":"Merge pull request #171 from tgen/v1.7.4_release_doc"}},{"before":null,"after":"a3f61853ee0dc8ad5266c334b3229b090dd3865c","ref":"refs/heads/v1.7.4_release_doc","pushedAt":"2023-11-28T22:55:28.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Added release doc and version bump in __init__.py","shortMessageHtmlLink":"Added release doc and version bump in __init__.py"}},{"before":"70e35ad0cac8a844364e8c2269206d95e84fcd57","after":null,"ref":"refs/heads/fix_singularity_mount_cwd","pushedAt":"2023-11-28T22:33:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"ecd8dfdcc4f9998c75ce6d0a07db7661e5f76de3","after":"917996730523c3f5229753e23662d204ecea81fb","ref":"refs/heads/develop","pushedAt":"2023-11-28T22:33:55.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Merge pull request #170 from tgen/fix_singularity_mount_cwd","shortMessageHtmlLink":"Merge pull request #170 from tgen/fix_singularity_mount_cwd"}},{"before":null,"after":"70e35ad0cac8a844364e8c2269206d95e84fcd57","ref":"refs/heads/fix_singularity_mount_cwd","pushedAt":"2023-11-28T22:28:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Simple fix for our logic that avoids mount cwd/pwd - adding more explicit checking","shortMessageHtmlLink":"Simple fix for our logic that avoids mount cwd/pwd - adding more expl…"}},{"before":"57dc5ff539e9973fa7722de466e23df2afba6149","after":null,"ref":"refs/heads/improve_gpu_detection_and_update_setup_py","pushedAt":"2023-11-17T00:00:36.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"93ef04df1c1ef0f1975095c1fbb804923ab28bd3","after":"ecd8dfdcc4f9998c75ce6d0a07db7661e5f76de3","ref":"refs/heads/develop","pushedAt":"2023-11-17T00:00:34.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Merge pull request #167 from tgen/improve_gpu_detection_and_update_setup_py\n\nSmall update to slurm_singularity's auto gpu detection and configuring setup.py to use networkx>=2.6,<3","shortMessageHtmlLink":"Merge pull request #167 from tgen/improve_gpu_detection_and_update_se…"}},{"before":null,"after":"57dc5ff539e9973fa7722de466e23df2afba6149","ref":"refs/heads/improve_gpu_detection_and_update_setup_py","pushedAt":"2023-11-16T23:43:38.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"We aren't ready for networkx>=3, configuring setup.py to reflect this","shortMessageHtmlLink":"We aren't ready for networkx>=3, configuring setup.py to reflect this"}},{"before":"47c638223bb9d1253ec9d2c77dfa3204c862e851","after":null,"ref":"refs/heads/improve_cache_detection","pushedAt":"2023-11-16T23:35:28.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"}},{"before":"e9dd199dad04662e47230819f29c0f34a131b001","after":"93ef04df1c1ef0f1975095c1fbb804923ab28bd3","ref":"refs/heads/develop","pushedAt":"2023-11-16T23:35:27.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Merge pull request #166 from tgen/improve_cache_detection\n\nFix for SINGULARITY_CACHEDIR usage, this follows the expected path in both default and set cases","shortMessageHtmlLink":"Merge pull request #166 from tgen/improve_cache_detection"}},{"before":null,"after":"bad7787bc5942bc18348c03a3811a64e2cc0ab4a","ref":"refs/heads/testing_get_sam_header","pushedAt":"2023-11-08T06:15:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Proof of concept for getting the header of a given SAM, BAM, CRAM. Allowing us to more dynamically populate a template without explicity asking for metadata.","shortMessageHtmlLink":"Proof of concept for getting the header of a given SAM, BAM, CRAM. Al…"}},{"before":null,"after":"47c638223bb9d1253ec9d2c77dfa3204c862e851","ref":"refs/heads/improve_cache_detection","pushedAt":"2023-11-07T19:35:47.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Cleaning whitespace and small fix for SINGULARITY_CACHEDIR usage, this follows the expected path in both default and set cases","shortMessageHtmlLink":"Cleaning whitespace and small fix for SINGULARITY_CACHEDIR usage, thi…"}},{"before":"e42b7fb18a1d700c7e36ce35bd86504b952fa09a","after":null,"ref":"refs/heads/fix_pipeline_path_for_run_command","pushedAt":"2023-11-03T00:39:37.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"}},{"before":"f9c735f37e0a8d6d4c343cf7d649b8856c527399","after":"e9dd199dad04662e47230819f29c0f34a131b001","ref":"refs/heads/develop","pushedAt":"2023-11-03T00:39:33.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"},"commit":{"message":"Merge pull request #164 from tgen/fix_pipeline_path_for_run_command\n\nBug fix for binding JS_PIPELINE_PATH differences between run and pipelines","shortMessageHtmlLink":"Merge pull request #164 from tgen/fix_pipeline_path_for_run_command"}},{"before":"08f8d02f44b0aa20036cd18fc85632dde11ee80e","after":null,"ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-11-03T00:36:40.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"}},{"before":"abd7397a101a5365e37ea25864f8e7c69d8b777b","after":"f9c735f37e0a8d6d4c343cf7d649b8856c527399","ref":"refs/heads/develop","pushedAt":"2023-11-03T00:36:36.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"},"commit":{"message":"Merge pull request #163 from tgen/pep440_versioning_adaptations\n\nUpdates to follow pep 440 versioning for pipelines","shortMessageHtmlLink":"Merge pull request #163 from tgen/pep440_versioning_adaptations"}},{"before":null,"after":"3359dd0b5f90a5a98740facd57395b88be7a821e","ref":"refs/heads/add_list_files_function","pushedAt":"2023-11-02T22:00:55.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Adding a function that returns a list of files found via glob, useful for cases of iterating over an unknown number of files that match a glob pattern","shortMessageHtmlLink":"Adding a function that returns a list of files found via glob, useful…"}},{"before":"8c820df6d3c610126802f5eba710fc4a4d4dac24","after":"e42b7fb18a1d700c7e36ce35bd86504b952fa09a","ref":"refs/heads/fix_pipeline_path_for_run_command","pushedAt":"2023-11-02T21:56:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"We need to pass the context to template functions that could be interpretting $JS_PIPELINE_PATH and replace this with the context value since JS_PIPELINE_PATH isn't in the env until runtime","shortMessageHtmlLink":"We need to pass the context to template functions that could be inter…"}},{"before":null,"after":"8c820df6d3c610126802f5eba710fc4a4d4dac24","ref":"refs/heads/fix_pipeline_path_for_run_command","pushedAt":"2023-11-01T18:05:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Singularity inspect is fast enough for us to scan all cached files, this allows us to search for cached images without necessarily looking for the digest","shortMessageHtmlLink":"Singularity inspect is fast enough for us to scan all cached files, t…"}},{"before":"946020857313e61e81ea70ef52f6bff9d473f05c","after":"08f8d02f44b0aa20036cd18fc85632dde11ee80e","ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-10-11T16:59:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"function renames and type casting to str for parse_version","shortMessageHtmlLink":"function renames and type casting to str for parse_version"}},{"before":"af24a1828858b08d99ffa9383bbf07b1f40954ad","after":"946020857313e61e81ea70ef52f6bff9d473f05c","ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-10-11T16:46:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Revert \"When writing to stdout from the pipelines subcommand, we should be more SIGPIPE friendly. These changes allow for a cleaner output from `jetstream pipelines -v pipeline@v1.0.0 | head`.\"\n\nThis reverts commit af24a1828858b08d99ffa9383bbf07b1f40954ad. Previous commit failed pytest and this isn't in the scope of the features for this branch.","shortMessageHtmlLink":"Revert \"When writing to stdout from the pipelines subcommand, we shou…"}},{"before":"877d73bffd7941656aba02cd6e6598752e7d4be5","after":"af24a1828858b08d99ffa9383bbf07b1f40954ad","ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-10-11T00:27:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"When writing to stdout from the pipelines subcommand, we should be more SIGPIPE friendly. These changes allow for a cleaner output from `jetstream pipelines -v pipeline@v1.0.0 | head`.","shortMessageHtmlLink":"When writing to stdout from the pipelines subcommand, we should be mo…"}},{"before":"1d13aa3023c3385abf8c58a85e1da2bd6b23b1a8","after":"877d73bffd7941656aba02cd6e6598752e7d4be5","ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-10-10T23:28:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"list_pipelines is will now output a sorted list (previously operated on the os.dir find order)","shortMessageHtmlLink":"list_pipelines is will now output a sorted list (previously operated …"}},{"before":null,"after":"1d13aa3023c3385abf8c58a85e1da2bd6b23b1a8","ref":"refs/heads/pep440_versioning_adaptations","pushedAt":"2023-10-10T20:04:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bryce-turner","name":"Bryce Turner","path":"/bryce-turner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40504111?s=80&v=4"},"commit":{"message":"Adjusted version parsing logic to effectively set \"development\" and similar labels as an alias to grabbing the most recent pipeline version\n\nThis allows us to be able to request \"pipeline@1.0.0.dev1\" via \"pipeline@development\".\nAdditionally if \"pipeline@development\" does exist in the search path, it is considered as the most recent version.","shortMessageHtmlLink":"Adjusted version parsing logic to effectively set \"development\" and s…"}},{"before":"e8238e37c2a0469350a4ac0d1d549a286fb08e82","after":"0823bae3acc8ca9e96fc2f05e2edc3ed6241ddd3","ref":"refs/heads/master","pushedAt":"2023-09-19T01:34:03.000Z","pushType":"pr_merge","commitsCount":24,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"},"commit":{"message":"Merge pull request #160 from tgen/develop\n\nv1.7.3 release","shortMessageHtmlLink":"Merge pull request #160 from tgen/develop"}},{"before":"e27e3b85dd3887358e6ff3e4bb7c20ff95ef6591","after":null,"ref":"refs/heads/v1.7.3_documentation","pushedAt":"2023-09-19T01:28:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"}},{"before":"90c93e5967ef18beda82bbcaa8cc60e7e8aa690f","after":"abd7397a101a5365e37ea25864f8e7c69d8b777b","ref":"refs/heads/develop","pushedAt":"2023-09-19T01:28:09.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"PedalheadPHX","name":"Jonathan Keats","path":"/PedalheadPHX","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/12407068?s=80&v=4"},"commit":{"message":"Merge pull request #159 from tgen/v1.7.3_documentation\n\n1.7.3 documentation and version bump","shortMessageHtmlLink":"Merge pull request #159 from tgen/v1.7.3_documentation"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD3Z1W2AA","startCursor":null,"endCursor":null}},"title":"Activity · tgen/jetstream"}