Gemfile.lock

PATH
  remote: vendor/engines/bulk_email
  specs:
    bulk_email (0.0.1)

PATH
  remote: vendor/engines/c2po
  specs:
    c2po (1.0.0)

PATH
  remote: vendor/engines/dataprobe
  specs:
    dataprobe (1.0.0)

PATH
  remote: vendor/engines/fine_uploader
  specs:
    fine_uploader (5.10.0)
      rails (~> 4.2.6)

PATH
  remote: vendor/engines/ldap_authentication
  specs:
    ldap_authentication (0.0.1)
      devise_ldap_authenticatable (>= 0.8.6)
      rails (>= 4.2)

PATH
  remote: vendor/engines/projects
  specs:
    projects (0.0.1)

PATH
  remote: vendor/engines/saml_authentication
  specs:
    saml_authentication (0.0.1)
      devise_saml_authenticatable
      rails (>= 4.2)

PATH
  remote: vendor/engines/sanger_sequencing
  specs:
    sanger_sequencing (0.0.1)
      rails (~> 4.0)

PATH
  remote: vendor/engines/secure_rooms
  specs:
    secure_rooms (0.0.1)

PATH
  remote: vendor/engines/split_accounts
  specs:
    split_accounts (0.0.1)

GEM
  remote: https://rubygems.org/
  specs:
    aasm (4.12.3)
      concurrent-ruby (~> 1.0)
    actionmailer (4.2.10)
      actionpack (= 4.2.10)
      actionview (= 4.2.10)
      activejob (= 4.2.10)
      mail (~> 2.5, >= 2.5.4)
      rails-dom-testing (~> 1.0, >= 1.0.5)
    actionpack (4.2.10)
      actionview (= 4.2.10)
      activesupport (= 4.2.10)
      rack (~> 1.6)
      rack-test (~> 0.6.2)
      rails-dom-testing (~> 1.0, >= 1.0.5)
      rails-html-sanitizer (~> 1.0, >= 1.0.2)
    actionview (4.2.10)
      activesupport (= 4.2.10)
      builder (~> 3.1)
      erubis (~> 2.7.0)
      rails-dom-testing (~> 1.0, >= 1.0.5)
      rails-html-sanitizer (~> 1.0, >= 1.0.3)
    activejob (4.2.10)
      activesupport (= 4.2.10)
      globalid (>= 0.3.0)
    activemodel (4.2.10)
      activesupport (= 4.2.10)
      builder (~> 3.1)
    activerecord (4.2.10)
      activemodel (= 4.2.10)
      activesupport (= 4.2.10)
      arel (~> 6.0)
    activerecord-oracle_enhanced-adapter (1.6.9)
    activesupport (4.2.10)
      i18n (~> 0.7)
      minitest (~> 5.1)
      thread_safe (~> 0.3, >= 0.3.4)
      tzinfo (~> 1.1)
    addressable (2.5.2)
      public_suffix (>= 2.0.2, < 4.0)
    airbrussh (1.3.0)
      sshkit (>= 1.6.1, != 1.7.0)
    arel (6.0.4)
    ast (2.4.0)
    awesome_nested_set (3.1.4)
      activerecord (>= 4.0.0, < 5.3)
    awesome_print (1.8.0)
    bcrypt (3.1.11)
    bootstrap-sass (2.3.2.2)
      sass (~> 3.2)
    builder (3.2.3)
    bullet (5.7.5)
      activesupport (>= 3.0.0)
      uniform_notifier (~> 1.11.0)
    byebug (10.0.0)
    cancancan (2.1.3)
    capistrano (3.10.1)
      airbrussh (>= 1.0.0)
      i18n
      rake (>= 10.0.0)
      sshkit (>= 1.9.0)
    capistrano-bundler (1.3.0)
      capistrano (~> 3.1)
      sshkit (~> 1.2)
    capistrano-rails (1.1.6)
      capistrano (~> 3.1)
      capistrano-bundler (~> 1.1)
    capistrano-rvm (0.1.2)
      capistrano (~> 3.0)
      sshkit (~> 1.2)
    capybara (2.18.0)
      addressable
      mini_mime (>= 0.1.3)
      nokogiri (>= 1.3.3)
      rack (>= 1.0.0)
      rack-test (>= 0.5.4)
      xpath (>= 2.0, < 4.0)
    capybara-email (2.5.0)
      capybara (~> 2.4)
      mail
    celluloid (0.17.3)
      celluloid-essentials
      celluloid-extras
      celluloid-fsm
      celluloid-pool
      celluloid-supervision
      timers (>= 4.1.1)
    celluloid-essentials (0.20.5)
      timers (>= 4.1.1)
    celluloid-extras (0.20.5)
      timers (>= 4.1.1)
    celluloid-fsm (0.20.5)
      timers (>= 4.1.1)
    celluloid-io (0.17.3)
      celluloid (>= 0.17.2)
      nio4r (>= 1.1)
      timers (>= 4.1.1)
    celluloid-pool (0.20.5)
      timers (>= 4.1.1)
    celluloid-supervision (0.20.6)
      timers (>= 4.1.1)
    choice (0.2.0)
    chosen-rails (1.8.3)
      coffee-rails (>= 3.2)
      railties (>= 3.0)
      sass-rails (>= 3.2)
    chronic (0.10.2)
    chronic_duration (0.10.6)
      numerizer (~> 0.1.1)
    ci_reporter (2.0.0)
      builder (>= 2.1.2)
    ci_reporter_rspec (1.0.0)
      ci_reporter (~> 2.0)
      rspec (>= 2.14, < 4)
    ckeditor (4.2.4)
      cocaine
      orm_adapter (~> 0.5.0)
    climate_control (0.2.0)
    cliver (0.3.2)
    clockpunch (0.1.12)
      coffee-script
      railties (>= 3.1)
      sass
    cocaine (0.6.0)
      terrapin (= 0.6.0)
    codeclimate-test-reporter (1.0.8)
      simplecov (<= 0.13)
    codeclimate_circle_ci_coverage (0.2.1)
      codeclimate-test-reporter (>= 1.0, < 2)
      simplecov (~> 0.11)
    coderay (1.1.2)
    coffee-rails (4.2.2)
      coffee-script (>= 2.2.0)
      railties (>= 4.0.0)
    coffee-script (2.4.1)
      coffee-script-source
      execjs
    coffee-script-source (1.12.2)
    coffeelint (1.16.1)
      coffee-script
      execjs
      json
    concurrent-ruby (1.0.5)
    config (1.7.0)
      activesupport (>= 3.0)
      deep_merge (~> 1.2.1)
      dry-validation (>= 0.10.4)
    crass (1.0.3)
    daemons (1.2.6)
    debug_inspector (0.0.2)
    deep_merge (1.2.1)
    delayed_job (4.1.3)
      activesupport (>= 3.0, < 5.2)
    delayed_job_active_record (4.1.2)
      activerecord (>= 3.0, < 5.2)
      delayed_job (>= 3.0, < 5)
    devise (4.4.3)
      bcrypt (~> 3.0)
      orm_adapter (~> 0.1)
      railties (>= 4.1.0, < 6.0)
      responders
      warden (~> 1.2.3)
    devise-encryptable (0.2.0)
      devise (>= 2.1.0)
    devise_ldap_authenticatable (0.8.6)
      devise (>= 3.4.1)
      net-ldap (>= 0.16.0)
    devise_saml_authenticatable (1.4.1)
      devise (> 2.0.0)
      ruby-saml (~> 1.7)
    diff-lcs (1.3)
    docile (1.1.5)
    dry-configurable (0.7.0)
      concurrent-ruby (~> 1.0)
    dry-container (0.6.0)
      concurrent-ruby (~> 1.0)
      dry-configurable (~> 0.1, >= 0.1.3)
    dry-core (0.4.4)
      concurrent-ruby (~> 1.0)
    dry-equalizer (0.2.0)
    dry-logic (0.4.2)
      dry-container (~> 0.2, >= 0.2.6)
      dry-core (~> 0.2)
      dry-equalizer (~> 0.2)
    dry-types (0.12.2)
      concurrent-ruby (~> 1.0)
      dry-configurable (~> 0.1)
      dry-container (~> 0.3)
      dry-core (~> 0.2, >= 0.2.1)
      dry-equalizer (~> 0.2)
      dry-logic (~> 0.4, >= 0.4.2)
      inflecto (~> 0.0.0, >= 0.0.2)
    dry-validation (0.11.1)
      concurrent-ruby (~> 1.0)
      dry-configurable (~> 0.1, >= 0.1.3)
      dry-core (~> 0.2, >= 0.2.1)
      dry-equalizer (~> 0.2)
      dry-logic (~> 0.4, >= 0.4.0)
      dry-types (~> 0.12.0)
    dynamic_form (1.1.4)
    erubis (2.7.0)
    eventmachine (1.2.5)
    exception_notification (4.2.2)
      actionmailer (>= 4.0, < 6)
      activesupport (>= 4.0, < 6)
    excon (0.60.0)
    execjs (2.7.0)
    eye (0.9.4)
      celluloid (~> 0.17.3)
      celluloid-io (~> 0.17.0)
      sigar (~> 0.7.3)
      state_machines
      thor
    eye-patch (0.4.2)
      chronic_duration
      eye (>= 0.6.2)
    factory_bot (4.8.2)
      activesupport (>= 3.0.0)
    factory_bot_rails (4.8.2)
      factory_bot (~> 4.8.2)
      railties (>= 3.0.0)
    ffi (1.9.18)
    fog-aws (2.0.1)
      fog-core (~> 1.38)
      fog-json (~> 1.0)
      fog-xml (~> 0.1)
      ipaddress (~> 0.8)
    fog-core (1.45.0)
      builder
      excon (~> 0.58)
      formatador (~> 0.2)
    fog-json (1.0.2)
      fog-core (~> 1.0)
      multi_json (~> 1.10)
    fog-xml (0.1.3)
      fog-core
      nokogiri (>= 1.5.11, < 2.0.0)
    font-awesome-rails (4.7.0.3)
      railties (>= 3.2, < 5.2)
    formatador (0.2.5)
    globalid (0.4.1)
      activesupport (>= 4.2.0)
    guard (2.14.1)
      formatador (>= 0.2.4)
      listen (>= 2.7, < 4.0)
      lumberjack (~> 1.0)
      nenv (~> 0.1)
      notiffany (~> 0.0)
      pry (>= 0.9.12)
      shellany (~> 0.0)
      thor (>= 0.18.1)
    guard-compat (1.2.1)
    guard-rspec (4.7.3)
      guard (~> 2.1)
      guard-compat (~> 1.1)
      rspec (>= 2.99.0, < 4.0)
    guard-teaspoon (0.8.0)
      guard (~> 2.2)
      teaspoon (>= 0.8.0)
    haml (5.0.4)
      temple (>= 0.8.0)
      tilt
    haml_lint (0.27.0)
      haml (>= 4.0, < 5.1)
      rainbow
      rake (>= 10, < 13)
      rubocop (>= 0.50.0)
      sysexits (~> 1.1)
    hitimes (1.2.6)
    i18n (0.9.5)
      concurrent-ruby (~> 1.0)
    icalendar (2.4.1)
    ice_cube (0.16.2)
    inflecto (0.0.2)
    ipaddress (0.8.3)
    jquery-rails (4.3.1)
      rails-dom-testing (>= 1, < 3)
      railties (>= 4.2.0)
      thor (>= 0.14, < 2.0)
    jquery-ui-rails (6.0.1)
      railties (>= 3.2.16)
    json (2.1.0)
    kgio (2.11.1)
    launchy (2.4.3)
      addressable (~> 2.3)
    letter_opener (1.6.0)
      launchy (~> 2.2)
    libv8 (3.16.14.17)
    listen (3.1.5)
      rb-fsevent (~> 0.9, >= 0.9.4)
      rb-inotify (~> 0.9, >= 0.9.7)
      ruby_dep (~> 1.2)
    lograge (0.9.0)
      actionpack (>= 4)
      activesupport (>= 4)
      railties (>= 4)
      request_store (~> 1.0)
    logstash-event (1.2.02)
    loofah (2.2.2)
      crass (~> 1.0.2)
      nokogiri (>= 1.5.9)
    lumberjack (1.0.11)
    mail (2.7.0)
      mini_mime (>= 0.1.1)
    method_source (0.9.0)
    mime-types (3.1)
      mime-types-data (~> 3.2015)
    mime-types-data (3.2016.0521)
    mimemagic (0.3.2)
    mini_mime (1.0.0)
    mini_portile2 (2.3.0)
    minitest (5.11.3)
    multi_json (1.13.1)
    mysql2 (0.4.10)
    nenv (0.3.0)
    nested_form_fields (0.8.2)
      coffee-rails (>= 3.2.1)
      jquery-rails
      rails (>= 3.2.0)
    net-ldap (0.16.1)
    net-scp (1.2.1)
      net-ssh (>= 2.6.5)
    net-ssh (4.2.0)
    nio4r (2.1.0)
    nokogiri (1.8.2)
      mini_portile2 (~> 2.3.0)
    notiffany (0.1.1)
      nenv (~> 0.1)
      shellany (~> 0.0)
    numerizer (0.1.1)
    oj (3.5.0)
    orm_adapter (0.5.0)
    paper_trail (8.1.2)
      activerecord (>= 4.2, < 5.2)
      request_store (~> 1.1)
    paperclip (6.0.0)
      activemodel (>= 4.2.0)
      activesupport (>= 4.2.0)
      mime-types
      mimemagic (~> 0.3.0)
      terrapin (~> 0.6.0)
    parallel (1.12.1)
    paranoia (2.4.0)
      activerecord (>= 4.0, < 5.2)
    parser (2.5.0.4)
      ast (~> 2.4.0)
    pdf-core (0.7.0)
    poltergeist (1.17.0)
      capybara (~> 2.1)
      cliver (~> 0.3.1)
      websocket-driver (>= 0.2.0)
    powerpack (0.1.1)
    prawn (2.2.2)
      pdf-core (~> 0.7.0)
      ttfunk (~> 1.5)
    prawn-table (0.2.2)
      prawn (>= 1.3.0, < 3.0.0)
    prawn_rails (0.0.11)
      prawn (>= 0.11.1)
      railties (>= 3.0.0)
    pry (0.11.3)
      coderay (~> 1.1.0)
      method_source (~> 0.9.0)
    pry-byebug (3.6.0)
      byebug (~> 10.0)
      pry (~> 0.10)
    pry-rails (0.3.6)
      pry (>= 0.10.4)
    public_suffix (3.0.2)
    rack (1.6.9)
    rack-test (0.6.3)
      rack (>= 1.0)
    rails (4.2.10)
      actionmailer (= 4.2.10)
      actionpack (= 4.2.10)
      actionview (= 4.2.10)
      activejob (= 4.2.10)
      activemodel (= 4.2.10)
      activerecord (= 4.2.10)
      activesupport (= 4.2.10)
      bundler (>= 1.3.0, < 2.0)
      railties (= 4.2.10)
      sprockets-rails
    rails-deprecated_sanitizer (1.0.3)
      activesupport (>= 4.2.0.alpha)
    rails-dom-testing (1.0.9)
      activesupport (>= 4.2.0, < 5.0)
      nokogiri (~> 1.6)
      rails-deprecated_sanitizer (>= 1.0.1)
    rails-erd (1.5.2)
      activerecord (>= 3.2)
      activesupport (>= 3.2)
      choice (~> 0.2.0)
      ruby-graphviz (~> 1.2)
    rails-html-sanitizer (1.0.4)
      loofah (~> 2.2, >= 2.2.2)
    rails-observers (0.1.5)
      activemodel (>= 4.0)
    railties (4.2.10)
      actionpack (= 4.2.10)
      activesupport (= 4.2.10)
      rake (>= 0.8.7)
      thor (>= 0.18.1, < 2.0)
    rainbow (3.0.0)
    raindrops (0.19.0)
    rake (12.3.1)
    rb-fsevent (0.10.2)
    rb-inotify (0.9.10)
      ffi (>= 0.5.0, < 2)
    redcarpet (3.4.0)
    ref (2.0.0)
    request_store (1.4.0)
      rack (>= 1.4)
    responders (2.4.0)
      actionpack (>= 4.2.0, < 5.3)
      railties (>= 4.2.0, < 5.3)
    rollbar (2.15.5)
      multi_json
    rspec (3.5.0)
      rspec-core (~> 3.5.0)
      rspec-expectations (~> 3.5.0)
      rspec-mocks (~> 3.5.0)
    rspec-activejob (0.6.1)
      activejob (>= 4.2)
      rspec-mocks
    rspec-collection_matchers (1.1.3)
      rspec-expectations (>= 2.99.0.beta1)
    rspec-core (3.5.4)
      rspec-support (~> 3.5.0)
    rspec-expectations (3.5.0)
      diff-lcs (>= 1.2.0, < 2.0)
      rspec-support (~> 3.5.0)
    rspec-mocks (3.5.0)
      diff-lcs (>= 1.2.0, < 2.0)
      rspec-support (~> 3.5.0)
    rspec-rails (3.5.2)
      actionpack (>= 3.0)
      activesupport (>= 3.0)
      railties (>= 3.0)
      rspec-core (~> 3.5.0)
      rspec-expectations (~> 3.5.0)
      rspec-mocks (~> 3.5.0)
      rspec-support (~> 3.5.0)
    rspec-support (3.5.0)
    rspec_junit_formatter (0.3.0)
      rspec-core (>= 2, < 4, != 2.12.0)
    rubocop (0.52.0)
      parallel (~> 1.10)
      parser (>= 2.4.0.2, < 3.0)
      powerpack (~> 0.1)
      rainbow (>= 2.2.2, < 4.0)
      ruby-progressbar (~> 1.7)
      unicode-display_width (~> 1.0, >= 1.0.1)
    ruby-graphviz (1.2.3)
    ruby-oci8 (2.2.5.1)
    ruby-ole (1.2.12.1)
    ruby-progressbar (1.9.0)
    ruby-saml (1.7.2)
      nokogiri (>= 1.5.10)
    ruby_dep (1.3.1)
    rubyzip (1.2.1)
    sass (3.5.5)
      sass-listen (~> 4.0.0)
    sass-listen (4.0.0)
      rb-fsevent (~> 0.9, >= 0.9.4)
      rb-inotify (~> 0.9, >= 0.9.7)
    sass-rails (5.0.7)
      railties (>= 4.0.0, < 6)
      sass (~> 3.1)
      sprockets (>= 2.8, < 4.0)
      sprockets-rails (>= 2.0, < 4.0)
      tilt (>= 1.1, < 3)
    shellany (0.0.1)
    shoulda-matchers (3.1.2)
      activesupport (>= 4.0.0)
    sigar (0.7.3)
    simple_form (3.5.0)
      actionpack (> 4, < 5.2)
      activemodel (> 4, < 5.2)
    simplecov (0.13.0)
      docile (~> 1.1.0)
      json (>= 1.8, < 3)
      simplecov-html (~> 0.10.0)
    simplecov-html (0.10.2)
    single_test (0.6.0)
      rake
    spreadsheet (1.1.7)
      ruby-ole (>= 1.0)
    spring (2.0.2)
      activesupport (>= 4.2)
    spring-commands-rspec (1.0.4)
      spring (>= 0.9.1)
    sprockets (3.7.1)
      concurrent-ruby (~> 1.0)
      rack (> 1, < 3)
    sprockets-rails (3.2.1)
      actionpack (>= 4.0)
      activesupport (>= 4.0)
      sprockets (>= 3.0.0)
    sshkit (1.15.1)
      net-scp (>= 1.1.2)
      net-ssh (>= 2.8.0)
    state_machines (0.5.0)
    synaccess_connect (0.3.0)
      nokogiri (>= 1.6)
    sysexits (1.2.0)
    teaspoon (1.1.5)
      railties (>= 3.2.5, < 6)
    teaspoon-jasmine (2.3.4)
      teaspoon (>= 1.0.0)
    temple (0.8.0)
    terrapin (0.6.0)
      climate_control (>= 0.0.3, < 1.0)
    text_helpers (0.7.0)
      activesupport
      i18n (>= 0.6.8)
      redcarpet (>= 3.3.3)
    therubyracer (0.12.3)
      libv8 (~> 3.16.14.15)
      ref
    thin (1.7.2)
      daemons (~> 1.0, >= 1.0.9)
      eventmachine (~> 1.0, >= 1.0.4)
      rack (>= 1, < 3)
    thor (0.20.0)
    thread_safe (0.3.6)
    tilt (2.0.8)
    timers (4.1.2)
      hitimes
    ttfunk (1.5.1)
    tzinfo (1.2.5)
      thread_safe (~> 0.1)
    uglifier (4.1.8)
      execjs (>= 0.3.0, < 3)
    unicode-display_width (1.3.0)
    unicorn (5.4.0)
      kgio (~> 2.6)
      raindrops (~> 0.7)
    uniform_notifier (1.11.0)
    vuejs-rails (1.0.24)
    warden (1.2.7)
      rack (>= 1.0)
    web-console (3.3.0)
      activemodel (>= 4.2)
      debug_inspector
      railties (>= 4.2)
    websocket-driver (0.7.0)
      websocket-extensions (>= 0.1.0)
    websocket-extensions (0.1.3)
    whenever (0.10.0)
      chronic (>= 0.6.3)
    where-or (0.1.6)
    will_paginate (3.1.6)
    xpath (3.0.0)
      nokogiri (~> 1.8)

PLATFORMS
  ruby

DEPENDENCIES
  aasm
  activerecord-oracle_enhanced-adapter
  awesome_nested_set
  awesome_print
  bootstrap-sass (~> 2.3.2)
  bulk_email!
  bullet
  c2po (~> 1.0.0)!
  cancancan
  capistrano
  capistrano-bundler
  capistrano-rails
  capistrano-rvm
  capybara
  capybara-email
  chosen-rails
  ci_reporter_rspec
  ckeditor
  clockpunch
  codeclimate_circle_ci_coverage
  coffee-rails
  coffeelint
  config
  daemons
  dataprobe (~> 1.0.0)!
  delayed_job_active_record
  devise
  devise-encryptable
  dynamic_form
  exception_notification
  eye-patch
  factory_bot_rails
  fine_uploader!
  fog-aws
  font-awesome-rails
  guard-rspec
  guard-teaspoon
  haml
  haml_lint
  icalendar
  ice_cube
  jquery-rails
  jquery-ui-rails
  ldap_authentication!
  letter_opener
  lograge
  logstash-event
  mysql2
  nested_form_fields
  nokogiri
  oj
  paper_trail
  paperclip
  paranoia
  poltergeist
  prawn
  prawn-table
  prawn_rails
  projects (~> 0.0.1)!
  pry-byebug
  pry-rails
  rails (= 4.2.10)
  rails-erd
  rails-observers
  rake
  rollbar
  rspec-activejob
  rspec-collection_matchers
  rspec-rails
  rspec_junit_formatter
  rubocop (= 0.52)
  ruby-oci8
  rubyzip
  saml_authentication!
  sanger_sequencing (~> 0.0.1)!
  sass-rails
  secure_rooms!
  shoulda-matchers
  simple_form
  single_test
  split_accounts (~> 0.0.1)!
  spreadsheet
  spring
  spring-commands-rspec
  synaccess_connect
  teaspoon-jasmine
  text_helpers
  therubyracer
  thin
  uglifier
  unicorn
  vuejs-rails
  web-console
  whenever
  where-or
  will_paginate

RUBY VERSION
   ruby 2.4.1p111

BUNDLED WITH
   1.16.1