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setup.py
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setup.py
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from setuptools import setup, find_packages
# read the contents of your README file
from os import path
this_directory = path.abspath(path.dirname(__file__))
with open(path.join(this_directory, "README.md"), encoding="utf-8") as f:
long_description = f.read()
CLASSIFIERS = [
"Environment :: Console",
"Environment :: MacOS X",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Natural Language :: English",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: C++",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
setup(
name="spacegraphcats",
description="tools for biological assembly graph neighborhood analysis",
url="https://github.com/spacegraphcats/spacegraphcats",
author="C. Titus Brown, Dominik Moritz, Michael P. O'Brien, Felix Reidl, Taylor Reiter, Yosuke Mizutani, and Blair D. Sullivan",
author_email="titus@idyll.org,blair.d.sullivan@gmail.com",
license="BSD 3-clause",
packages=find_packages(),
classifiers=CLASSIFIERS,
entry_points={
"console_scripts": ["spacegraphcats = spacegraphcats.__main__:main"]
},
include_package_data=True,
package_data={"spacegraphcats": ["Snakefile", "*.yaml", "*.json"]},
setup_requires=[
"setuptools>=38.6.0",
"setuptools_scm",
"setuptools_scm_git_archive",
],
use_scm_version={"write_to": "spacegraphcats/version.py"},
install_requires=[
"screed >= 1.1,<2",
"pytest",
"numpy",
"snakemake==7.30.1",
"sortedcontainers",
"sourmash>=4.6.1,<5",
"khmer",
"bbhash >= 0.5.4",
"click >= 8.1.2,<9",
],
long_description=long_description,
long_description_content_type="text/markdown",
)