{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":119214027,"defaultBranch":"main","name":"wort","ownerLogin":"sourmash-bio","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-01-28T00:18:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/59402508?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1702874926.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"7abda08551a139b76e3df9e5ff65d3b766657afe","ref":"refs/heads/lirber/pixi","pushedAt":"2023-12-18T04:48:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"init pixi","shortMessageHtmlLink":"init pixi"}},{"before":"fdc9f9452e1122874d0238ffa188a4707a72c100","after":null,"ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-18T04:40:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"30f413f5b3a707c85908c6bbfc015fb71502c1da","after":"09d6ee552c85360fdc60e9d59e2fc757c2c6dd99","ref":"refs/heads/main","pushedAt":"2023-12-18T04:40:47.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Set up sentry (#68)\n\nFor tracking performance and errors across backend and workers","shortMessageHtmlLink":"Set up sentry (#68)"}},{"before":"fd70c58d7f24c9c2d971d4a6be2f6cbfd93f2209","after":"fdc9f9452e1122874d0238ffa188a4707a72c100","ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-18T02:36:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"remove snakemake dep","shortMessageHtmlLink":"remove snakemake dep"}},{"before":null,"after":"fd70c58d7f24c9c2d971d4a6be2f6cbfd93f2209","ref":"refs/heads/lirber/sentry","pushedAt":"2023-12-17T22:58:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"init sentry","shortMessageHtmlLink":"init sentry"}},{"before":"b962e56ce2ad0737845d7eb29f1f3190d4e76753","after":null,"ref":"refs/heads/dependabot/pip/urllib3-1.26.17","pushedAt":"2023-10-18T00:49:14.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"44e999342d62576f0e51caa845b5d4b1df81ba5b","ref":"refs/heads/dependabot/pip/urllib3-1.26.18","pushedAt":"2023-10-18T00:49:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump urllib3 from 1.26.16 to 1.26.18\n\nBumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.16 to 1.26.18.\n- [Release notes](https://github.com/urllib3/urllib3/releases)\n- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)\n- [Commits](https://github.com/urllib3/urllib3/compare/1.26.16...1.26.18)\n\n---\nupdated-dependencies:\n- dependency-name: urllib3\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump urllib3 from 1.26.16 to 1.26.18"}},{"before":"91a0a3a8c48aae24708c233c0dbeaafa4b33dfa7","after":null,"ref":"refs/heads/dependabot/pip/gitpython-3.1.34","pushedAt":"2023-10-10T20:35:13.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"abcd9106e9e5035747584ebc9db64cdf3d95019c","ref":"refs/heads/dependabot/pip/gitpython-3.1.37","pushedAt":"2023-10-10T20:35:07.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump gitpython from 3.1.31 to 3.1.37\n\nBumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.31 to 3.1.37.\n- [Release notes](https://github.com/gitpython-developers/GitPython/releases)\n- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)\n- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.31...3.1.37)\n\n---\nupdated-dependencies:\n- dependency-name: gitpython\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump gitpython from 3.1.31 to 3.1.37"}},{"before":null,"after":"b962e56ce2ad0737845d7eb29f1f3190d4e76753","ref":"refs/heads/dependabot/pip/urllib3-1.26.17","pushedAt":"2023-10-03T03:48:20.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump urllib3 from 1.26.16 to 1.26.17\n\nBumps [urllib3](https://github.com/urllib3/urllib3) from 1.26.16 to 1.26.17.\n- [Release notes](https://github.com/urllib3/urllib3/releases)\n- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)\n- [Commits](https://github.com/urllib3/urllib3/compare/1.26.16...1.26.17)\n\n---\nupdated-dependencies:\n- dependency-name: urllib3\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump urllib3 from 1.26.16 to 1.26.17"}},{"before":null,"after":"c2fd5ad061f04c79369b4efcb5e3583de6c4cd03","ref":"refs/heads/lirber/greyhound_updates","pushedAt":"2023-09-16T17:26:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"greyhound updates","shortMessageHtmlLink":"greyhound updates"}},{"before":"9600e12732e4fff44fddde0b7898bb3ab16fcc78","after":null,"ref":"refs/heads/dependabot/pip/gitpython-3.1.32","pushedAt":"2023-09-06T18:28:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}},{"before":null,"after":"91a0a3a8c48aae24708c233c0dbeaafa4b33dfa7","ref":"refs/heads/dependabot/pip/gitpython-3.1.34","pushedAt":"2023-09-06T18:28:15.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump gitpython from 3.1.31 to 3.1.34\n\nBumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.31 to 3.1.34.\n- [Release notes](https://github.com/gitpython-developers/GitPython/releases)\n- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)\n- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.31...3.1.34)\n\n---\nupdated-dependencies:\n- dependency-name: gitpython\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump gitpython from 3.1.31 to 3.1.34"}},{"before":"db5aa9ac0fce1f4780de6815a8ab9c50c656ef35","after":null,"ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:26:21.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"94930ca1b542eefeaa32e24afedd2d51c626d08c","after":"30f413f5b3a707c85908c6bbfc015fb71502c1da","ref":"refs/heads/main","pushedAt":"2023-09-04T20:26:15.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Support metatranscriptomes in daily download (#62)\n\n- expose metatranscriptomes in CLI\r\n- allow setting `start` and `end` dates for range support\r\n- refactor code to make it easier to update in the future\r\n\r\npending: there is a limit of 10k results\r\n([source](https://www.ncbi.nlm.nih.gov/books/NBK25499/#chapter4.ESearch)),\r\nso might need to change the biopython call to support ranges longer than\r\na day (and :crossed_fingers: no day will have more than 10k records\r\n:joy: )\r\n\r\n---------\r\n\r\nCo-authored-by: Luiz Irber ","shortMessageHtmlLink":"Support metatranscriptomes in daily download (#62)"}},{"before":"8cc5a5527240f200f94fa5f3c44a81f60ca63097","after":"db5aa9ac0fce1f4780de6815a8ab9c50c656ef35","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:20:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"deps","shortMessageHtmlLink":"deps"}},{"before":"f35feeb7a67075f8f630aa619e24a86370341f16","after":"8cc5a5527240f200f94fa5f3c44a81f60ca63097","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-09-04T20:11:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"Fixes for genome download and frontend","shortMessageHtmlLink":"Fixes for genome download and frontend"}},{"before":"a97212c5a371d43f07faa8aa130964e806d07dd2","after":"f35feeb7a67075f8f630aa619e24a86370341f16","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-08-17T01:39:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"fix output naming","shortMessageHtmlLink":"fix output naming"}},{"before":null,"after":"a97212c5a371d43f07faa8aa130964e806d07dd2","ref":"refs/heads/lirber/metatranscriptomes","pushedAt":"2023-08-17T01:36:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"add end argument","shortMessageHtmlLink":"add end argument"}},{"before":"b30fa1eb1ab2b6626d295ea52e1d2885f6d121f1","after":null,"ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-17T00:04:20.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"}},{"before":"cd0ebaedfb9448955e6745ec3a0aa51cd97ef182","after":"94930ca1b542eefeaa32e24afedd2d51c626d08c","ref":"refs/heads/main","pushedAt":"2023-08-17T00:04:16.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"use biopython entrez utils for daily downloads (#60)\n\n* biopython version\r\n\r\n* clean up\r\n\r\n* add biopython and pandas dep, run daily update on web container for now\r\n\r\n---------\r\n\r\nCo-authored-by: Luiz Irber ","shortMessageHtmlLink":"use biopython entrez utils for daily downloads (#60)"}},{"before":"c3f156ab4212d4d0d1717bfc9fae72230a296ef2","after":"b30fa1eb1ab2b6626d295ea52e1d2885f6d121f1","ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-16T23:43:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"luizirber","name":"Luiz Irber","path":"/luizirber","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6642?s=80&v=4"},"commit":{"message":"add biopython and pandas dep, run daily update on web container for now","shortMessageHtmlLink":"add biopython and pandas dep, run daily update on web container for now"}},{"before":null,"after":"9600e12732e4fff44fddde0b7898bb3ab16fcc78","ref":"refs/heads/dependabot/pip/gitpython-3.1.32","pushedAt":"2023-08-11T20:44:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump gitpython from 3.1.31 to 3.1.32\n\nBumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.31 to 3.1.32.\n- [Release notes](https://github.com/gitpython-developers/GitPython/releases)\n- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)\n- [Commits](https://github.com/gitpython-developers/GitPython/compare/3.1.31...3.1.32)\n\n---\nupdated-dependencies:\n- dependency-name: gitpython\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump gitpython from 3.1.31 to 3.1.32"}},{"before":"7a7dd0c46783eb904a256e842807d3184ff653c3","after":"c3f156ab4212d4d0d1717bfc9fae72230a296ef2","ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-03T16:33:04.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bluegenes","name":"Tessa Pierce Ward","path":"/bluegenes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7740734?s=80&v=4"},"commit":{"message":"clean up","shortMessageHtmlLink":"clean up"}},{"before":"cc6bf62d8c76ac1d77cc9fa45000d2b5f8afdf8d","after":"7a7dd0c46783eb904a256e842807d3184ff653c3","ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-03T16:32:21.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bluegenes","name":"Tessa Pierce Ward","path":"/bluegenes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7740734?s=80&v=4"},"commit":{"message":"clean up","shortMessageHtmlLink":"clean up"}},{"before":"e5825c0bb86cd62aec58bdd583a37c54afe61277","after":"cc6bf62d8c76ac1d77cc9fa45000d2b5f8afdf8d","ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-03T16:24:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bluegenes","name":"Tessa Pierce Ward","path":"/bluegenes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7740734?s=80&v=4"},"commit":{"message":"clean up","shortMessageHtmlLink":"clean up"}},{"before":null,"after":"e5825c0bb86cd62aec58bdd583a37c54afe61277","ref":"refs/heads/edirect-biopython","pushedAt":"2023-08-03T16:14:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bluegenes","name":"Tessa Pierce Ward","path":"/bluegenes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7740734?s=80&v=4"},"commit":{"message":"biopython version","shortMessageHtmlLink":"biopython version"}},{"before":null,"after":"f55f953c0eebaeaaef0f774a1ad924360b61b8a6","ref":"refs/heads/edirect-daily-dl","pushedAt":"2023-08-02T23:54:54.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bluegenes","name":"Tessa Pierce Ward","path":"/bluegenes","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7740734?s=80&v=4"},"commit":{"message":"upd for edirect","shortMessageHtmlLink":"upd for edirect"}},{"before":null,"after":"38a21ac113b0b62e630a3a85843cbaa925c2e4e8","ref":"refs/heads/dependabot/pip/certifi-2023.7.22","pushedAt":"2023-07-25T23:29:35.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump certifi from 2023.5.7 to 2023.7.22\n\nBumps [certifi](https://github.com/certifi/python-certifi) from 2023.5.7 to 2023.7.22.\n- [Commits](https://github.com/certifi/python-certifi/compare/2023.05.07...2023.07.22)\n\n---\nupdated-dependencies:\n- dependency-name: certifi\n dependency-type: direct:production\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump certifi from 2023.5.7 to 2023.7.22"}},{"before":"caa61e6484fa82e9dfde985b13031a294ff2aa81","after":null,"ref":"refs/heads/dependabot/pip/flask-2.3.2","pushedAt":"2023-06-19T00:01:46.791Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADzI8zTQA","startCursor":null,"endCursor":null}},"title":"Activity ยท sourmash-bio/wort"}