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sig overlap and sig subtract should be upgraded to support more than JSON sigs #3136

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ctb opened this issue May 4, 2024 · 0 comments · Fixed by #3153
Closed

sig overlap and sig subtract should be upgraded to support more than JSON sigs #3136

ctb opened this issue May 4, 2024 · 0 comments · Fixed by #3153

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@ctb
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ctb commented May 4, 2024

right now neither of them operate on .sig.zip files AFAICT

@ctb ctb closed this as completed in #3153 Jun 4, 2024
ctb added a commit that referenced this issue Jun 4, 2024
…signatures (#3153)

Fix `sig overlap` and `sig subtract` to take more than just JSON
signatures.

Also, adds a function `sourmash_args.load_one_signature` that I think
should (eventually) replace the now-deprecated
`sourmash.signature.load_one_signature`. This will be the topic of a new
PR - for now, I think it's a nice quick fix!

Fixes #3136

Related issues:
* #1062 - will do another
PR to close this issue
* #1877
* #1312
* #1060

TODO:
- [x] test uncovered code
- [x] do a bit more of a search and digest of related issues to see if
there's other low hanging fruit

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Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
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