/
pyproject.toml
175 lines (158 loc) · 5.14 KB
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pyproject.toml
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[build-system]
requires = [
"setuptools >= 61",
"setuptools_scm[toml] >= 4, <6",
"setuptools_scm_git_archive",
"milksnake",
"wheel >= 0.29.0",
]
build-backend = 'setuptools.build_meta'
[project]
name = "sourmash"
description = "tools for comparing biological sequences with k-mer sketches"
readme = "README.md"
authors = [
{ name="Luiz Irber", orcid="0000-0003-4371-9659" },
{ name="Mohamed Abuelanin", orcid="0000-0002-3419-4785" },
{ name="Harriet Alexander", orcid="0000-0003-1308-8008" },
{ name="Abhishek Anant", orcid="0000-0002-5751-2010" },
{ name="Keya Barve", orcid="0000-0003-3241-2117" },
{ name="Colton Baumler", orcid="0000-0002-5926-7792" },
{ name="Olga Botvinnik", orcid="0000-0003-4412-7970" },
{ name="Phillip Brooks", orcid="0000-0003-3987-244X" },
{ name="Peter Cock", orcid="0000-0001-9513-9993" },
{ name="Daniel Dsouza", orcid="0000-0001-7843-8596" },
{ name="Laurent Gautier", orcid="0000-0003-0638-3391" },
{ name="Tim Head", orcid="0000-0003-0931-3698" },
{ name="Mahmudur Rahman Hera", orcid="0000-0002-5992-9012" },
{ name="Hannah Eve Houts", orcid="0000-0002-7954-4793" },
{ name="Lisa K. Johnson", orcid="0000-0002-3600-7218" },
{ name="Fabian Klötzl", orcid="0000-0002-6930-0592" },
{ name="David Koslicki", orcid="0000-0002-0640-954X" },
{ name="Katrin Leinweber", orcid="0000-0001-5135-5758" },
{ name="Marisa Lim", orcid="0000-0003-2097-8818" },
{ name="Ricky Lim", orcid="0000-0003-1313-7076" },
{ name="Ivan Ogasawara", orcid="0000-0001-5049-4289" },
{ name="N. Tessa Pierce", orcid="0000-0002-2942-5331" },
{ name="Taylor Reiter", orcid="0000-0002-7388-421X" },
{ name="Camille Scott", orcid="0000-0001-8822-8779" },
{ name="Andreas Sjödin", orcid="0000-0001-5350-4219" },
{ name="Connor T. Skennerton", orcid="0000-0003-1320-4873" },
{ name="Jason Stajich", orcid="0000-0002-7591-0020" },
{ name="Daniel Standage", orcid="0000-0003-0342-8531" },
{ name="S. Joshua Swamidass", orcid="0000-0003-2191-0778" },
{ name="Connor Tiffany", orcid="0000-0001-8188-7720" },
{ name="Pranathi Vemuri", orcid="0000-0002-5748-9594"},
{ name="Erik Young", orcid="0000-0002-9195-9801" },
{ name="Nick H", orcid="0000-0002-1685-302X" },
{ name="C. Titus Brown", orcid="0000-0001-6001-2677" },
]
maintainers = [
{ name="Luiz Irber", email="luiz@sourmash.bio", orcid="0000-0003-4371-9659" },
{ name="C. Titus Brown", email="titus@idyll.org", orcid="0000-0001-6001-2677" },
]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Environment :: Console",
"Environment :: MacOS X",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Natural Language :: English",
"Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Programming Language :: Rust",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Topic :: Scientific/Engineering :: Bio-Informatics",
]
dependencies = [
"screed>=1.0.5",
"cffi>=1.14.0",
"numpy",
"matplotlib",
"scipy",
"deprecation>=2.0.6",
"cachetools>=4,<6",
"bitstring>=3.1.9,<4",
]
requires-python = ">=3.8"
dynamic = ["version"]
[metadata]
license = { text = "BSD 3-Clause License" }
[project.urls]
"Homepage" = "https://sourmash.bio/"
"Documentation" = "https://sourmash.readthedocs.io"
"CI" = "https://github.com/sourmash-bio/sourmash/actions"
"Source" = "https://github.com/sourmash-bio/sourmash"
"Tracker" = "https://github.com/sourmash-bio/sourmash/issues"
[project.scripts]
"sourmash" = "sourmash.__main__:main"
[project.optional-dependencies]
test = [
"pytest>=6.2.4,<7.2.0",
"pytest-cov>=2.12,<5.0",
"pytest-xdist",
"pyyaml>=6,<7",
"recommonmark",
"hypothesis",
]
demo = [
"jupyter",
"jupyter_client",
"ipython",
]
doc = [
"sphinx>=4.4.0,<6",
"myst-parser==0.18.1",
"Jinja2==3.1.2",
"alabaster",
"sphinxcontrib-napoleon",
"nbsphinx",
"ipython",
"docutils>=0.17.1,<0.18",
]
storage = [
"ipfshttpclient>=0.4.13",
"redis",
]
# hmm, I think this is a hack, but it works...
# https://github.com/pypa/pip/issues/10393#issuecomment-941885429
all = ["sourmash[test,demo,doc,storage]"]
[tool.setuptools]
zip-safe = false
platforms = ["any"]
[tool.setuptools.packages.find]
where = ["src"]
[tool.setuptools.dynamic]
version = {attr = "sourmash.version.version"}
[tool.setuptools_scm]
write_to = "src/sourmash/version.py"
git_describe_command = "git describe --dirty --tags --long --match v* --first-parent"
[tool.isort]
known_third_party = ["deprecation", "hypothesis", "mmh3", "numpy", "pkg_resources", "pytest", "screed", "setuptools", "sourmash_tst_utils"]
multi_line_output = 3
include_trailing_comma = true
force_grid_wrap = 0
line_length = 88
known_first_party = ["sourmash"]
[tool.cibuildwheel]
build = "cp39-*"
skip = "*-win32 *-manylinux_i686 *-musllinux_ppc64le *-musllinux_s390x"
before-build = "source .ci/install_cargo.sh"
environment = { PATH="$HOME/.cargo/bin:$PATH" }
build-verbosity = 3
[tool.pytest.ini_options]
addopts = "--doctest-glob='doc/*.md' -n4"
norecursedirs = [
"utils",
"build",
"buildenv",
".tox",
".asv",
".eggs",
]
testpaths = [
"tests",
"doc",
]