From 30ee7c70ce71e4206a57bb2d9daf28b8e7fceec6 Mon Sep 17 00:00:00 2001 From: "Dr. K.D. Murray" Date: Tue, 20 Sep 2022 17:16:35 +0200 Subject: [PATCH] fix: k8s container volume mounts as list As described in the body of PR https://github.com/snakemake/snakemake/pull/1858 --- snakemake/executors/__init__.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/snakemake/executors/__init__.py b/snakemake/executors/__init__.py index 349e6e71d..a918b34f3 100644 --- a/snakemake/executors/__init__.py +++ b/snakemake/executors/__init__.py @@ -1853,10 +1853,8 @@ def run(self, job, callback=None, submit_callback=None, error_callback=None): container.args = ["-c", exec_job] container.working_dir = "/workdir" container.volume_mounts = [ - kubernetes.client.V1VolumeMount(name="workdir", mount_path="/workdir") - ] - container.volume_mounts = [ - kubernetes.client.V1VolumeMount(name="source", mount_path="/source") + kubernetes.client.V1VolumeMount(name="workdir", mount_path="/workdir"), + kubernetes.client.V1VolumeMount(name="source", mount_path="/source"), ] node_selector = {}