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Error when using wrappers and use rule as #2836

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fgvieira opened this issue Apr 23, 2024 · 0 comments
Open

Error when using wrappers and use rule as #2836

fgvieira opened this issue Apr 23, 2024 · 0 comments
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bug Something isn't working

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@fgvieira
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Snakemake version

v8.10.8

Describe the bug

The use of wrapper with use rule ... as ... with is incompatible.

Logs

Error message:

SyntaxError in file /home/lnc113/TEST/Snakefile, line 6:
Unexpected keyword wrapper in rule definition:
None

Minimal example

rule A:
    output:
        "out.1.fq",
        "out.2.fq",
    wrapper:
        "bio/trimmomatic/pe"

use rule A as B with:
    output:
        "out.fq",
    wrapper:
        "bio/trimmomatic/se"
@fgvieira fgvieira added the bug Something isn't working label Apr 23, 2024
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