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--directory vs workflow.source_path #57

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cmeesters opened this issue Jan 17, 2024 · 0 comments
Open

--directory vs workflow.source_path #57

cmeesters opened this issue Jan 17, 2024 · 0 comments
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enhancement New feature or request

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On clusters, we are dealing with different file systems. For support personal, it is advantageous to have

  • a Snakefile in HOME, along with all the scripts, configs, etc.
  • data somewhere else

Specifying --directory /filesystem/project/data will result in snakemake not finding its config and script files. Using workflow.source_path(...) will make a workflow robust in this regard.
@cmeesters cmeesters added the enhancement New feature or request label Jan 17, 2024
@cmeesters cmeesters self-assigned this Jan 18, 2024
cmeesters added a commit that referenced this issue Apr 25, 2024
@cmeesters
feat: solving issue #57
2d7d9da
@cmeesters cmeesters mentioned this issue Apr 25, 2024
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@github-actions github-actions bot mentioned this issue May 15, 2024
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