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Missing support for --clusters option #53
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Actually, the idea is: provide the most-common flags, wrap everything else in However, I will discuss adding |
Thank you very much for looking into this. |
Please check, whether PR #56 fixes your issue: I do not have access to a multicluster setup. That might change in the future, but for now, I cannot test this feature. And you are right: Checking the job status and cancelling jobs, has to be done be the executor plugin. If the information is only available at submit time, this would not be sufficient. |
Hi,
Our hpc runs 2 slurm clusters, this requires us to provide the -M or --cluster option to most slurm related commands like sbatch, squeue and scancel. This option is unsupported in snakemake 8+ as far as i can tell. In older snakemake versions support existed through profiles.
I can get submission to work by specifying --cluster in slurm_extra. However, snakemake is unable to detect when a job finishes and start the next set of rules.
slurm: 23.02.7
snakemake: 8.9.0
snakemake-executor-plugin-slurm: 0.4.2
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