diff --git a/www/NeuroML-DB.org/Gemfile.lock b/www/NeuroML-DB.org/Gemfile.lock
old mode 100755
new mode 100644
index a0c0183f02..c9cb55590b
--- a/www/NeuroML-DB.org/Gemfile.lock
+++ b/www/NeuroML-DB.org/Gemfile.lock
@@ -56,7 +56,6 @@ GEM
     mocha (0.13.3)
       metaclass (~> 0.0.1)
     multi_json (1.7.2)
-    mysql2 (0.3.21)
     net-ldap (0.3.1)
     nokogiri (1.5.9)
     polyglot (0.3.3)
@@ -89,7 +88,7 @@ GEM
     rdoc (3.12.2)
       json (~> 1.4)
     ruby-openid (2.1.8)
-    rubyzip (1.2.2)
+    rubyzip (1.3.0)
     selenium-webdriver (2.31.0)
       childprocess (>= 0.2.5)
       multi_json (~> 1.0)
@@ -122,14 +121,12 @@ PLATFORMS
 
 DEPENDENCIES
   activerecord-jdbc-adapter (= 1.2.5)
-  activerecord-jdbcmysql-adapter
   builder
   capybara (~> 2.0.0)
   coderay
   fastercsv
   i18n
   mocha
-  mysql2 (~> 0.3.17)
   net-ldap
   rack-openid
   rails