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Jail doctestplus outputs in tmpdir #98

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@pllim pllim commented Mar 13, 2020

This was originally implemented by @jdavies-st as astropy/astropy#9439 but was decided that this should move here instead.

Fix #68

xref astropy/astropy#10037

TODO

  • Does this need a change log?
  • How do we test this? Does this really work?

@pllim pllim added the bug label Mar 13, 2020
@pllim pllim requested review from astrofrog and bsipocz March 13, 2020 20:46
doctest_plugin = request.config.pluginmanager.getplugin("doctestplus")
if isinstance(request.node, doctest_plugin._doctest_textfile_item_cls):
# Don't apply this fixture to io.rst. It reads files and doesn't write
if "io.rst" not in request.node.name:
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io.rst sounds awfully specific to astropy core library. How do we generalize this?

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Only based on the narrative, I don't get why would it hurt to still apply when it reads files but not writes?

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Yeah, this is specific to the astropy core library. The problem with that doctest is that it looks for an input file in the working directory. If one makes the working dir a tmpdir, then the file is no longer in the working directory, so one needs a general way of getting the file. Using importlib.resources might be the solution.

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It is available as an external package for python 3.6 and earlier. importlib_resources One can do something like.

https://github.com/spacetelescope/asdf/blob/522f25b60715612dd1369a644c756fb7572b89d1/asdf/tests/helpers.py#L45-L51

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pllim commented Mar 13, 2020

    @pytest.fixture(autouse=True)
    def _docdir(request):
        """Run doctests in isolated tmpdir so outputs do not end up in repo"""
        # Trigger ONLY for doctestplus
        doctest_plugin = request.config.pluginmanager.getplugin("doctestplus")
>       if isinstance(request.node, doctest_plugin._doctest_textfile_item_cls):
E       AttributeError: 'NoneType' object has no attribute '_doctest_textfile_item_cls'

Okay, so I guess direct copy-paste didn't work. Any ideas?

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bsipocz commented Mar 13, 2020

Yes, it does need a changelog.

As for a test, can we not just try to write a dummy file in one of the tests? Though I'm not fussy, if it works locally for astropy, I would be happy to merge and open a reminder issue instead, rather than not merging but waiting for a good test solution.

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I can think of two ways to test:

  • Have two doctests that run one after the other - the first creates a file and the second asserts that the file doesn't exist

  • Have a doctest that creates a file, and use pytest_configure/pytest_unconfigure to make sure no files are created in the current working directory over the entire test suite run

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pllim commented Mar 16, 2020

I feel like we cannot proceed here until we know how #95 plays out.

pllim and others added 2 commits March 16, 2020 17:12
Co-authored-by: James Davies <jdavies@stsci.edu>
"""Run doctests in isolated tmpdir so outputs do not end up in repo"""
# Trigger ONLY for doctestplus
doctest_plugin = request.config.pluginmanager.getplugin("pytest_doctestplus")
if isinstance(request.node, doctest_plugin.DocTestTextfilePlus):
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Not sure how to access the class name when this fixture lives in the plugin itself and not over at core lib.

AttributeError: module 'pytest_doctestplus.plugin' has no attribute 'DocTestTextfilePlus'

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pllim commented Apr 1, 2020

I think we need to find a different solution on this side.

@pllim pllim closed this Apr 1, 2020
@pllim pllim deleted the output-tmpdir branch April 1, 2020 21:18
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Prevent doctest dumping/leaving files in repo
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