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config.mk.in
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config.mk.in
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# Optional configure Makefile overrides for htslib.
#
# Copyright (C) 2015-2017, 2019, 2023 Genome Research Ltd.
#
# Author: John Marshall <jm18@sanger.ac.uk>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
# This is @configure_input@
#
# If you use configure, this file overrides variables and augments rules
# in the Makefile to reflect your configuration choices. If you don't run
# configure, the main Makefile contains suitable conservative defaults.
prefix = @prefix@
exec_prefix = @exec_prefix@
bindir = @bindir@
includedir = @includedir@
libdir = @libdir@
libexecdir = @libexecdir@
datarootdir = @datarootdir@
mandir = @mandir@
CC = @CC@
RANLIB = @RANLIB@
CPPFLAGS = @CPPFLAGS@
CFLAGS = @CFLAGS@
LDFLAGS = @LDFLAGS@
VERSION_SCRIPT_LDFLAGS = @VERSION_SCRIPT_LDFLAGS@
LIBS = @LIBS@
PLATFORM = @PLATFORM@
PLUGIN_EXT = @PLUGIN_EXT@
# The default Makefile enables some of the optional files, but we blank
# them so they can be controlled by configure instead.
NONCONFIGURE_OBJS =
# Lowercase here indicates these are "local" to config.mk
plugin_OBJS =
noplugin_LDFLAGS =
noplugin_LIBS =
# ifeq/.../endif, +=, and target-specific variables are GNU Make-specific.
# If you don't have GNU Make, comment out this conditional and note that
# to enable libcurl you will need to implement the following elsewhere.
ifeq "libcurl-@libcurl@" "libcurl-enabled"
LIBCURL_LIBS = -lcurl
plugin_OBJS += hfile_libcurl.o
hfile_libcurl$(PLUGIN_EXT): LIBS += $(LIBCURL_LIBS)
noplugin_LIBS += $(LIBCURL_LIBS)
endif
ifeq "gcs-@gcs@" "gcs-enabled"
plugin_OBJS += hfile_gcs.o
endif
ifeq "s3-@s3@" "s3-enabled"
plugin_OBJS += hfile_s3.o
plugin_OBJS += hfile_s3_write.o
CRYPTO_LIBS = @CRYPTO_LIBS@
noplugin_LIBS += $(CRYPTO_LIBS)
hfile_s3$(PLUGIN_EXT): LIBS += $(CRYPTO_LIBS)
hfile_s3_write$(PLUGIN_EXT): LIBS += $(CRYPTO_LIBS) $(LIBCURL_LIBS)
endif
ifeq "plugins-@enable_plugins@" "plugins-yes"
plugindir = @plugindir@
pluginpath = @pluginpath@
LIBHTS_OBJS += plugin.o
PLUGIN_OBJS += $(plugin_OBJS)
plugin.o plugin.pico: ALL_CPPFLAGS += -DPLUGINPATH=\"$(pluginpath)\"
# When built as separate plugins, these record their version themselves.
hfile_gcs.o hfile_gcs.pico: version.h
hfile_libcurl.o hfile_libcurl.pico: version.h
hfile_s3.o hfile_s3.pico: version.h
hfile_s3_write.o hfile_s3_write.pico: version.h
# Windows DLL plugins depend on the import library, built as a byproduct.
$(plugin_OBJS:.o=.cygdll): cyghts-$(LIBHTS_SOVERSION).dll
else
LIBHTS_OBJS += $(plugin_OBJS)
LDFLAGS += $(noplugin_LDFLAGS)
LIBS += $(noplugin_LIBS)
endif
# Extra CFLAGS for specific files
HTS_CFLAGS_AVX2 = @hts_cflags_avx2@
HTS_CFLAGS_AVX512 = @hts_cflags_avx512@
HTS_CFLAGS_SSE4 = @hts_cflags_sse4@