[Bug]: --log-junit and --coverage-xml conflicts

[ndench]

What Happened

I use the junit and xml coverage output from Pest for Infection.
This has been working until Pest 2.32.0 where junit support was added to 2.x.
Before this, I believe that PHPUnit was outputting it's own Junit output which somehow was working fine.

The previous junit.xml format

<?xml version="1.0" encoding="UTF-8"?>
<testsuites>
  <testsuite name="/var/www/html/phpunit.xml.dist" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.057603">
    <testsuite name="Project Test Suite" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.057603">
      <testsuite name="P\Tests\CalculatorTest" file="/var/www/html/vendor/pestphp/pest/src/Factories/TestCaseFactory.php(196) : eval()'d code" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.057603">
        <testcase name="__pest_evaluable_it_adds" file="/var/www/html/vendor/pestphp/pest/src/Factories/TestCaseFactory.php(196) : eval()'d code" line="22" class="P\Tests\CalculatorTest" classname="P.Tests.CalculatorTest" assertions="1" time="0.054071"/>
        <testcase name="__pest_evaluable_it_subtracts" file="/var/www/html/vendor/pestphp/pest/src/Factories/TestCaseFactory.php(196) : eval()'d code" line="37" class="P\Tests\CalculatorTest" classname="P.Tests.CalculatorTest" assertions="1" time="0.003532"/>
      </testsuite>
    </testsuite>
  </testsuite>
</testsuites>

The current junit.xml format

<?xml version="1.0" encoding="UTF-8"?>
<testsuites>
  <testsuite name="/var/www/html/phpunit.xml.dist" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.052996">
    <testsuite name="Project Test Suite" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.052996">
      <testsuite name="Tests\CalculatorTest" file="tests/CalculatorTest.php" tests="2" assertions="2" errors="0" failures="0" skipped="0" time="0.052996">
        <testcase name="it adds" file="tests/CalculatorTest.php::it adds" class="Tests\CalculatorTest" classname="Tests.CalculatorTest" assertions="1" time="0.050272"/>
        <testcase name="it subtracts" file="tests/CalculatorTest.php::it subtracts" class="Tests\CalculatorTest" classname="Tests.CalculatorTest" assertions="1" time="0.002724"/>
      </testsuite>
    </testsuite>
  </testsuite>
</testsuites>

The new format is much better, however I believe the xml coverage report also needs to be updated, as it now references tests that do not exist <covered by="P\Tests\CalculatorTest::__pest_evaluable_it_adds"/>

The coverage-xml report

<?xml version="1.0"?>
<phpunit xmlns="https://schema.phpunit.de/coverage/1.0">
  <file name="Calculator.php" path="/">
    <totals>
      <lines total="17" comments="0" code="17" executable="2" executed="2" percent="100.00"/>
      <methods count="2" tested="2" percent="100.00"/>
      <functions count="0" tested="0" percent="0"/>
      <classes count="1" tested="1" percent="100.00"/>
      <traits count="0" tested="0" percent="0"/>
    </totals>
    <class name="App\Calculator" start="5" executable="2" executed="2" crap="2">
      <namespace name="App"/>
      <method name="add" signature="add($a, $b)" start="7" end="10" crap="1" executable="1" executed="1" coverage="100"/>
      <method name="subtract" signature="subtract($a, $b)" start="12" end="15" crap="1" executable="1" executed="1" coverage="100"/>
    </class>
    <coverage>
      <line nr="9">
        <covered by="P\Tests\CalculatorTest::__pest_evaluable_it_adds"/>
      </line>
      <line nr="14">
        <covered by="P\Tests\CalculatorTest::__pest_evaluable_it_subtracts"/>
      </line>
    </coverage>
    <source>
      <!-- ... -->
    </source>
  </file>
</phpunit>

This causes infection to fail because it cannot find the necessary tests:

In TestFileNameNotFoundException.php line 48:

  [Infection\TestFramework\Coverage\JUnit\TestFileNameNotFoundException]
  For FQCN: P\Tests\CalculatorTest. Junit report: /var/www/html/build/junit.xml

How to Reproduce

Using reproducer

I created a small reproducer: https://github.com/ndench/pest-junit-xml-conflicts
To use this, you'll need:

• git
• docker compose
• make

1. git clone git@github.com:ndench/pest-junit-xml-conflicts.git
2. make vendor
3. make test

Now you can see the junit output at build/junit.xml and the coverage XML output at build/coverage-xml.
You can also run make infect to see the error from infection.

Switch to Pest 2.31

1. make pest-2.31
2. make test

Now you can see the previous build/junit.xml output, and also run make infect to see infection pass.

You can also use make pest-2.32 which will install 2.32.0 to see the first version which introduced the change.
And make pest-latest to get back to the latest version.

From scratch

It's also very easy to do this yourself from a blank project.

1. Install a fresh php app (framework doesn't matter, I used Symfony in my sample).
2. Create a PHP file that does something
3. Create a Pest test for the PHP file
4. Run pest with the --log-junit and --coverage-xml flags
5. Note conflicts detailed above in the junit.xml and xml coverage

Sample Repository

https://github.com/ndench/pest-junit-xml-conflicts

Pest Version

2.32.0-2.33.6

PHP Version

8.2.13

Operation System

Linux

Notes

By manually editing the vendor/pestphp/pest/src/Bootstrappers/BootOverrides.php, I can make Pest use the old PHPUnit format to workaround this issue temporarily. But I don't believe this is a solution to the problem on it's own.

[michael-rubel]

I can confirm that Pest 2.x is unusable with Infection. Before merging a proper JUnit logging it was not failing on CI, but also was not reporting any mutants, you were always getting the 100% MSI.

[nuernbergerA]

Hey @ndench

Can you confirm that it works if you manipulate the coverage XML to match the junit output

<covered by="Tests\CalculatorTest::it adds"/>

[ndench]

Hey @nuernbergerA, yes I can confirm that changing the coverage XML manually makes infection work.

ie. I made the following change to coverage-xml/index.xml

    <tests>
-      <test name="P\Tests\CalculatorTest::__pest_evaluable_it_adds" size="unknown" status="success"/>
+      <test name="Tests\CalculatorTest::it adds" size="unknown" status="success"/>
-      <test name="P\Tests\CalculatorTest::__pest_evaluable_it_subtracts" size="unknown" status="success"/>
+      <test name="Tests\CalculatorTest::it subtracts" size="unknown" status="success"/>
    </tests>

And the following change to coverage-xml/Calculator.php.xml

    <coverage>
      <line nr="9">
-        <covered by="P\Tests\CalculatorTest::__pest_evaluable_it_adds"/>
+        <covered by="Tests\CalculatorTest::it adds"/>
      </line>
      <line nr="14">
-        <covered by="P\Tests\CalculatorTest::__pest_evaluable_it_subtracts"/>
+        <covered by="Tests\CalculatorTest::it subtracts"/>
      </line>
    </coverage>

[Sjustein]

Is anything blocking the junit output from changing back? If not, it should be relatively simple to 'rollback' the changes to the junit output right?

[nuernbergerA]

Just rolling back isn't the right thing because then the location is messed up again.

I will open a PR that will output a working XML for both scenarios.

[nuernbergerA]

@ndench @michael-rubel @Sjustein

please check the #1145 if anything works now

[Sjustein]

Infection does indeed understand this format again, but it always reports a 100% mutation score. I'm not sure if this is an issue specific to your implementation though, it might just be something with infection. Thanks for the great speed!