{"payload":{"pageCount":3,"repositories":[{"type":"Public","name":"npg-irods-python","owner":"wtsi-npg","isFork":false,"description":"Applications for the management of data and metadata in iRODS","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":6,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T13:59:51.075Z"}},{"type":"Public","name":"samtools_container","owner":"wtsi-npg","isFork":false,"description":"Scripts to create a docker container for samtools","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":1,"issueCount":2,"starsCount":1,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T13:25:01.295Z"}},{"type":"Public","name":"p4","owner":"wtsi-npg","isFork":false,"description":"Process and Pipe Pipeline Panacea ","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":9,"issueCount":7,"starsCount":3,"forksCount":15,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T11:04:17.341Z"}},{"type":"Public","name":"npg_seq_pipeline","owner":"wtsi-npg","isFork":false,"description":"Processing and analysis of data coming from Illumina sequencing machines","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":8,"issueCount":23,"starsCount":9,"forksCount":17,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T16:51:08.679Z"}},{"type":"Public","name":"npg_tracking","owner":"wtsi-npg","isFork":false,"description":"WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":3,"issueCount":12,"starsCount":3,"forksCount":18,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T13:38:20.035Z"}},{"type":"Public","name":"npg_ml_warehouse","owner":"wtsi-npg","isFork":false,"description":"Analysis results loader for the multi-lims warehouse, see ml_warehouse project for the warehouse details.","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":9,"starsCount":0,"forksCount":13,"license":null,"participation":[4,0,1,3,1,1,1,9,0,1,5,1,4,0,0,0,0,1,2,0,0,0,0,0,0,4,0,0,1,0,2,0,0,5,0,4,0,2,4,2,0,3,0,0,0,0,2,0,2,0,2,6],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T11:14:35.399Z"}},{"type":"Public","name":"npg_irods","owner":"wtsi-npg","isFork":false,"description":"Tools for managing HTS (BAM and CRAM) format files in iRODS.","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":2,"issueCount":17,"starsCount":2,"forksCount":17,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T17:50:34.426Z"}},{"type":"Public","name":"logshim-zerolog","owner":"wtsi-npg","isFork":false,"description":"logshim-zerolog is a backend using Zerolog for https://github.com/wtsi-npg/logshim","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":[1,0,1,1,0,0,0,1,1,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,8,1,0,0,0,0,0,0,0,0,0,0,1,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T09:40:50.560Z"}},{"type":"Public","name":"extendo","owner":"wtsi-npg","isFork":false,"description":"An extension to baton providing a Go API for iRODS (Integrated Rule-Oriented Data System)","allTopics":["baton","irods"],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T09:40:25.348Z"}},{"type":"Public","name":"valet","owner":"wtsi-npg","isFork":false,"description":"Automated data mangement for Oxford Nanopore DNA sequencing instruments","allTopics":["nanopore","baton","irods","oxford-nanopore","gridion","extendo","promethion"],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":4,"starsCount":2,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T09:35:55.218Z"}},{"type":"Public","name":"sqyrrl","owner":"wtsi-npg","isFork":false,"description":"Sqyrrl - an HTTP server for files hosted in iRODS","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T09:27:23.971Z"}},{"type":"Public","name":"partisan","owner":"wtsi-npg","isFork":false,"description":"A Python client API for iRODS","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":5,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T09:20:33.618Z"}},{"type":"Public","name":"npg_qc","owner":"wtsi-npg","isFork":false,"description":"QC checks and metrics for Illumina NGS data","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":20,"starsCount":5,"forksCount":17,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T21:21:45.116Z"}},{"type":"Public","name":"ml_warehouse","owner":"wtsi-npg","isFork":false,"description":"Perl DBIx binding to a warehouse housing data from multiple LIM systems ","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":1,"starsCount":3,"forksCount":13,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T21:02:27.385Z"}},{"type":"Public","name":"perl-irods-wrap","owner":"wtsi-npg","isFork":false,"description":"Perl iRODS Client Wrapper Library","allTopics":["irods","perl"],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":10,"starsCount":4,"forksCount":18,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T20:41:59.935Z"}},{"type":"Public","name":"npg_seq_common","owner":"wtsi-npg","isFork":false,"description":"Utilities for handling NGS data","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":15,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T19:40:11.970Z"}},{"type":"Public","name":"npg_langqc","owner":"wtsi-npg","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":2,"starsCount":0,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T16:34:03.094Z"}},{"type":"Public","name":"bambi","owner":"wtsi-npg","isFork":false,"description":"Process Illumina instrument data into SAM/BAM/CRAM files.","allTopics":["bam-files","bioinformatics","illumina","htslib"],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":8,"starsCount":9,"forksCount":14,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T07:59:49.776Z"}},{"type":"Public","name":"go-irodsclient","owner":"wtsi-npg","isFork":true,"description":"Go iRODS Client","allTopics":[],"primaryLanguage":{"name":"Go","color":"#00ADD8"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":7,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T09:52:11.478Z"}},{"type":"Public","name":"npg_sentry","owner":"wtsi-npg","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":11,"starsCount":0,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T11:54:41.543Z"}},{"type":"Public","name":"npg_porch_cli","owner":"wtsi-npg","isFork":false,"description":"A command-line client to enable communication with the npg_porch API.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-14T10:05:53.024Z"}},{"type":"Public","name":"genotyping","owner":"wtsi-npg","isFork":false,"description":"Components of the WTSI genotype analysis pipeline.","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":1,"issueCount":11,"starsCount":5,"forksCount":7,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T10:44:06.999Z"}},{"type":"Public archive","name":"npg_sequencescape_warehouse","owner":"wtsi-npg","isFork":false,"description":"Old sequencescape warehouse: DBIx binding, loader, LIMs driver for st::api::lims","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-10T16:16:37.498Z"}},{"type":"Public","name":"baton","owner":"wtsi-npg","isFork":false,"description":"iRODS client programs and API","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":14,"starsCount":19,"forksCount":19,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-10T09:56:03.773Z"}},{"type":"Public","name":"containers","owner":"wtsi-npg","isFork":false,"description":"Singularity and Docker material","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":8,"starsCount":1,"forksCount":5,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-07T12:59:12.002Z"}},{"type":"Public","name":"irods_development_environment","owner":"wtsi-npg","isFork":true,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":11,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-06T09:41:00.387Z"}},{"type":"Public","name":"npg_porch","owner":"wtsi-npg","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":9,"starsCount":2,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T14:22:47.423Z"}},{"type":"Public","name":"irods","owner":"wtsi-npg","isFork":true,"description":"Middleware for your critical data.","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":141,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-19T09:03:28.968Z"}},{"type":"Public","name":"npg_id_generation","owner":"wtsi-npg","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-17T16:04:57.255Z"}},{"type":"Public","name":"irods-metadata","owner":"wtsi-npg","isFork":false,"description":"Description of a subset of metadata used in WTSI iRODS","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-04T15:07:28.484Z"}}],"repositoryCount":76,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}