{"payload":{"pageCount":2,"repositories":[{"type":"Public","name":"onecodex","owner":"onecodex","isFork":false,"description":"Command line interface and Python client library for the One Codex API","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":28,"starsCount":22,"forksCount":11,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-05T22:57:47.109Z"}},{"type":"Public","name":"rust-bfield","owner":"onecodex","isFork":false,"description":"B-field implementation in Rust","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":4,"starsCount":192,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T13:55:25.951Z"}},{"type":"Public","name":"taxonomy","owner":"onecodex","isFork":false,"description":"Python and Rust library for loading, saving, and manipulating taxonomic trees","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":8,"starsCount":34,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T06:45:25.892Z"}},{"type":"Public","name":"needletail","owner":"onecodex","isFork":false,"description":"Fast FASTX parsing and k-mer methods in Rust ","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":1,"issueCount":15,"starsCount":164,"forksCount":18,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-08T16:37:03.760Z"}},{"type":"Public","name":"finch-rs","owner":"onecodex","isFork":false,"description":"A genomic minhashing implementation in Rust","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":2,"issueCount":15,"starsCount":90,"forksCount":8,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-15T17:12:12.381Z"}},{"type":"Public","name":"docker-onecodex-notebook","owner":"onecodex","isFork":false,"description":"Docker image with a Jupyter notebook environment for embedded use on One Codex","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":2,"issueCount":3,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-12T21:49:06.826Z"}},{"type":"Public","name":"chrononaut","owner":"onecodex","isFork":false,"description":"A history mixin with audit logging, record locking, and time travel for FlaskSQLAlchemy","allTopics":["python","flask","postgres","sqlalchemy","flask-sqlalchemy"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":3,"starsCount":17,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-08T21:48:08.492Z"}},{"type":"Public","name":"mmap-bitvec","owner":"onecodex","isFork":false,"description":"Rust implementation of a mmap-based bit vector","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":4,"starsCount":5,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-06T00:07:54.306Z"}},{"type":"Public","name":"sars-cov-2","owner":"onecodex","isFork":false,"description":"SARS-CoV-2 variant calling and consensus assembly pipeline","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":1,"starsCount":23,"forksCount":6,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-18T22:28:08.927Z"}},{"type":"Public","name":"potion","owner":"onecodex","isFork":true,"description":"Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":51,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-03T14:51:15.953Z"}},{"type":"Public","name":"flask-login","owner":"onecodex","isFork":true,"description":"Flask user session management.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":791,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-31T12:09:33.233Z"}},{"type":"Public","name":"altair_saver","owner":"onecodex","isFork":true,"description":"Altair extension for saving charts in a variety of formats.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":32,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-19T01:32:48.076Z"}},{"type":"Public","name":"flask-limiter","owner":"onecodex","isFork":true,"description":"rate limiting extension for flask applications","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":122,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-29T16:55:55.088Z"}},{"type":"Public","name":"genome_portal_api","owner":"onecodex","isFork":true,"description":"Python package to access and download data from the ATCC Genome Portal (https://genomes.atcc.org/)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-03-10T13:18:53.071Z"}},{"type":"Public","name":"flask-smorest","owner":"onecodex","isFork":true,"description":"DB agnostic framework to build auto-documented REST APIs with Flask and marshmallow","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":71,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-02-09T17:30:07.145Z"}},{"type":"Public","name":"assembly-annotation-tools","owner":"onecodex","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":4,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-12-08T11:27:18.137Z"}},{"type":"Public","name":"limit-secrets-test","owner":"onecodex","isFork":false,"description":"This repository's sole purpose is to verify that secrets may indeed be limited to a selected branch","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-06-14T13:40:47.812Z"}},{"type":"Public","name":"sdust","owner":"onecodex","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Rust","color":"#dea584"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-05-05T09:03:51.639Z"}},{"type":"Public template","name":"template-python","owner":"onecodex","isFork":false,"description":"Template Python repository","allTopics":[],"primaryLanguage":{"name":"Makefile","color":"#427819"},"pullRequestCount":3,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-11-15T17:51:42.189Z"}},{"type":"Public archive","name":"laptop","owner":"onecodex","isFork":true,"description":"A shell script to set up a macOS laptop for web and mobile development.","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1909,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-08-19T14:42:10.127Z"}},{"type":"Public","name":"abricate","owner":"onecodex","isFork":true,"description":"πŸ”Ž πŸ’Š Mass screening of contigs for antimicrobial and virulence genes","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":86,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-07-02T13:02:43.349Z"}},{"type":"Public","name":"terraform-aws-eks","owner":"onecodex","isFork":true,"description":"Terraform module to create an Elastic Kubernetes (EKS) cluster and associated worker instances on AWS","allTopics":[],"primaryLanguage":{"name":"HCL","color":"#844FBA"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3956,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-05-25T16:28:17.123Z"}},{"type":"Public","name":"metagraph","owner":"onecodex","isFork":true,"description":"Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":15,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-04-14T20:35:04.390Z"}},{"type":"Public","name":"docker-shovill","owner":"onecodex","isFork":false,"description":"Docker container for tseemann/shovill","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-31T21:53:18.026Z"}},{"type":"Public","name":"docker-unicycler","owner":"onecodex","isFork":false,"description":"Docker container for the Unicycler hybrid assembler","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":1,"issueCount":0,"starsCount":2,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-31T21:53:00.059Z"}},{"type":"Public","name":"public-dockerfiles","owner":"onecodex","isFork":false,"description":"Public Dockerfiles","allTopics":[],"primaryLanguage":{"name":"Dockerfile","color":"#384d54"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-01-31T21:52:20.287Z"}},{"type":"Public","name":"bacillus-anthracis-panel","owner":"onecodex","isFork":false,"description":"Description of One Codex B. anthracis marker panel design and testing","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Creative Commons Attribution 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-14T16:27:55.901Z"}},{"type":"Public","name":"nim-bitarray","owner":"onecodex","isFork":false,"description":"Bitarray implementation in Nim","allTopics":[],"primaryLanguage":{"name":"Nim","color":"#ffc200"},"pullRequestCount":0,"issueCount":1,"starsCount":10,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-14T16:27:55.574Z"}},{"type":"Public","name":"onecodex-uploader","owner":"onecodex","isFork":false,"description":"(DEPRECATED) GUI uploader for the One Codex site","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-12-14T16:27:54.845Z"}},{"type":"Public","name":"homebrew-bio","owner":"onecodex","isFork":true,"description":"πŸΊπŸ”¬ Bioinformatics formulae for the Homebrew package manager (macOS and Linux)","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":118,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-21T22:18:15.423Z"}}],"repositoryCount":60,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}