generate

#!/bin/bash

print_status_msg() {
  echo -e "[generate] "$1;
}

print_msg() {
  echo -e $1
}

run_analysis() {
  print_status_msg "Running analysis on data sets"
  cd scripts
  ./pipeline.py ../data_sets
  ./createHtmlDocs.py
  cd ..
}

clean_results() {
  print_status_msg "Cleaning results"
  cd scripts
  ./pipeline.py clean
  cd ..
}

compile_report() {
  print_status_msg "Generating report"
  cd report
  pdflatex report
  bibtex report
  pdflatex report
  pdflatex report
  pdflatex report
  cd ..
}

clean_report() {
  print_status_msg "Cleaning report folder"
  cd report
  rm *.aux
  rm *.log
  rm report.out
  rm report.bbl
  rm report.blg
  rm report.toc
  rm report.pdf
  cd ..
}

create_misc_latex() {
  print_status_msg "Running the createLatex script for subfigures etc"
  cd scripts
  ./createLatex.py
  cd ..
}

view_report() {
  if ! [[ "$1" == "yes" ]]; then
    print_msg "Would you like to display the report (y/n)?"
    read dispans
    case "$dispans" in
      y|yes);;
      *)
        exit 0
        ;;
    esac
  fi

  if ! [ -e report/report.pdf ]; then
    print_msg "The report does not exist, compile it first!"
    exit 1
  fi

  print_status_msg "Displaying report"

  # Choose pdf viewer depending on OS
  osname=`uname`
  if [[ "$osname" == "Linux" ]]; then
    evince report/report.pdf&
  elif [[ "$osname" == "Darwin" ]]; then
    open report/report.pdf
  fi
}

print_help() {
  print_msg "Script to generate analysis results and compile the report"
  print_msg ""
  print_msg "Usage:"
  print_msg "generate option"
  print_msg ""
  print_msg "Options:"
  print_msg "all\t\t Runs analysis and compiles the report."
  print_msg "report\t\t Compiles the report only."
  print_msg "analysis\t Runs the analysis only."
  print_msg "viewreport\t Displays the report using a PDF viewer."
  print_msg "clean\t\t Removes the folder 'results' containing all anaylsis results as well as cleaning the 'report' folder from all files created by Latex."
  print_msg ""
}

# Handle the script's options
case "$1" in
  all)
    run_analysis
    create_misc_latex
    compile_report
    print_status_msg "Done"
    view_report
    ;;
  report)
    # Can only generate report if results exists
    if [ ! -d results/ ]; then
      print_status_msg "Results are missing! Run analysis before compiling report!"
      exit
    fi
    create_misc_latex
    compile_report
    print_status_msg "Done"
    view_report
    ;;
  analysis)
    run_analysis
    print_status_msg "Done"
    ;;
  viewreport)
    view_report yes
    ;;
  clean)
    clean_results
    clean_report
    print_status_msg "Done"
    ;;
  --help|*)
    print_help
    ;;
esac