can't delete file in jupyterlab #15234

li1311139481 · 2023-10-07T07:30:46Z

Description

I'm using jupyterlab 4.0.6 in a cluster.
When i want delete a file in jupyterlab. I get an error like this.

This error occurs when I try to create and then delete files in jupyterlab, and when I try to delete existing files. I have checked the permissions of these files in the terminal, where I can delete them.
The error message in terminal like this:

[W 2023-10-07 15:04:16.735 ServerApp] delete /zifeng001/ZF065_ovarian_ascites/Junlian/sada.ipynb
[W 2023-10-07 15:04:16.736 ServerApp] 400 DELETE /api/contents/zifeng001/ZF065_ovarian_ascites/Junlian/sada.ipynb?1696662257091 (10.26.20.81): send2trash f`1ailed: [Errno 13] P
ermission denied: b'/cluster/.Trash-1085'
[W 2023-10-07 15:04:16.737 ServerApp] wrote error: "send2trash f`1ailed: [Errno 13] Permission denied: b'/cluster/.Trash-1085'"
    Traceback (most recent call last):
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/send2trash/plat_other.py", line 158, in find_ext_volume_fallback_trash
        check_create(trash_dir)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/send2trash/plat_other.py", line 96, in check_create
        os.makedirs(dir, 0o700)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/os.py", line 225, in makedirs
        mkdir(name, mode)
    PermissionError: [Errno 13] Permission denied: b'/cluster/.Trash-1085'

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/jupyter_server/services/contents/filemanager.py", line 979, in delete_file
        send2trash(os_path)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/send2trash/plat_other.py", line 210, in send2trash
        dest_trash = find_ext_volume_trash(topdir)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/send2trash/plat_other.py", line 169, in find_ext_volume_trash
        trash_dir = find_ext_volume_fallback_trash(volume_root)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/send2trash/plat_other.py", line 161, in find_ext_volume_fallback_trash
        raise TrashPermissionError(e.filename)
    send2trash.exceptions.TrashPermissionError: [Errno 13] Permission denied: b'/cluster/.Trash-1085'

    The above exception was the direct cause of the following exception:

    Traceback (most recent call last):
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/tornado/web.py", line 1713, in _execute
        result = await result
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/jupyter_server/services/contents/handlers.py", line 282, in delete
        await ensure_async(cm.delete(path))
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/jupyter_core/utils/__init__.py", line 184, in ensure_async
        result = await obj
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/jupyter_server/services/contents/manager.py", line 882, in delete
        await self.delete_file(path)
      File "/cluster/facility/hlhuang/miniconda3/envs/jlab/lib/python3.10/site-packages/jupyter_server/services/contents/filemanager.py", line 981, in delete_file
        raise web.HTTPError(400, "send2trash f`1ailed: %s" % e) from e
    tornado.web.HTTPError: HTTP 400: Bad Request (send2trash f`1ailed: [Errno 13] Permission denied: b'/cluster/.Trash-1085')

Reproduce

I don't know how to reproduce it in other environments. All I did was simply delete a file

Expected behavior

I hope you can help me to solve it, because deleting files in jupyterlab is a very convenient feature

Context

Operating System and version: Linux version 3.10.0-514.21.1.el7.x86_64 (builder@kbuilder.dev.centos.org) (gcc version 4.8.5 20150623 (Red Hat 4.8.5-11) (GCC) ) #1 SMP Thu May 25 17:04:51 UTC 2017
Browser and version:
JupyterLab version: Firefox 118.0.1

The text was updated successfully, but these errors were encountered:

krassowski · 2023-10-08T13:43:54Z

In past I experience the same issue in a managed cluster environment. I believe this is not JupyterLab specific and has a root cause in the jupyter-server/send2trash, possibly following jupyter-server/jupyter_server#1291. Would you mind opening an issue over in jupyter-server repository?

JasonWeill · 2023-10-17T16:14:11Z

@li1311139481 Thank you for opening this issue! As @krassowski suggested, can you please open an issue in https://github.com/jupyter-server/jupyter_server/ if you still see this problem? I'm going to close this in JupyterLab, as the root cause is likely in Server, not in Lab. I appreciate your contribution.

krassowski · 2024-01-02T13:49:01Z

The upstream issue: jupyter-server/jupyter_server#1338

li1311139481 added the bug label Oct 7, 2023

jupyterlab-probot bot added the status:Needs Triage Applied to new issues that need triage label Oct 7, 2023

JasonWeill added the status:Needs Info label Oct 10, 2023

JasonWeill mentioned this issue Oct 10, 2023

Weekly Triage meetings: Jul–Dec 2023 jupyterlab/frontends-team-compass#203

Closed

JasonWeill closed this as completed Oct 17, 2023

krassowski mentioned this issue Jan 2, 2024

can't delete file from the file explorer #15589

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can't delete file in jupyterlab #15234

can't delete file in jupyterlab #15234

li1311139481 commented Oct 7, 2023

krassowski commented Oct 8, 2023

JasonWeill commented Oct 17, 2023

krassowski commented Jan 2, 2024

can't delete file in jupyterlab #15234

can't delete file in jupyterlab #15234

Comments

li1311139481 commented Oct 7, 2023

Description

Reproduce

Expected behavior

Context

krassowski commented Oct 8, 2023

JasonWeill commented Oct 17, 2023

krassowski commented Jan 2, 2024