diff --git a/piptools/scripts/compile.py b/piptools/scripts/compile.py
index 590adf89b..6864e432d 100755
--- a/piptools/scripts/compile.py
+++ b/piptools/scripts/compile.py
@@ -322,7 +322,19 @@ def cli(
                 from distutils.core import run_setup
 
                 dist = run_setup(src_file)
-                tmpfile.write("\n".join(dist.install_requires))
+                deps = dist.install_requires
+
+                # parse additional dependencies in extras_require
+                # which might come from parsing environment markers
+                extras_deps = []
+                for extra_name, extra_pkgs in dist.extras_require.items():
+                    if extra_name.startswith(":"):
+                        marker = extra_name[1:]
+                        for pkg in extra_pkgs:
+                            extras_deps.append("{} ; {}".format(pkg, marker))
+
+                deps += extras_deps
+                tmpfile.write("\n".join(deps))
             else:
                 tmpfile.write(sys.stdin.read())
             tmpfile.flush()
diff --git a/tests/test_cli_compile.py b/tests/test_cli_compile.py
index 5014d07bf..7531500b2 100644
--- a/tests/test_cli_compile.py
+++ b/tests/test_cli_compile.py
@@ -58,6 +58,36 @@ def test_command_line_setuptools_read(pip_conf, runner):
     assert os.path.exists("requirements.txt")
 
 
+def test_command_line_setuptools_with_env_markers_read(pip_conf, runner):
+    package = open("setup.py", "w")
+    package.write(
+        dedent(
+            """\
+            from setuptools import setup
+            setup(
+                install_requires=[
+                    'small-fake-a==0.1 ; "linux" in sys_platform',
+                    'small-fake-a==0.2 ; "win32" in sys_platform',
+                    'small-fake-a==0.3b1 ; "darwin" in sys_platform'
+                ]
+            )
+            """
+        )
+    )
+    package.close()
+    out = runner.invoke(cli)
+
+    # check that pip-compile generated a configuration
+    assert "This file is autogenerated by pip-compile" in out.stderr
+    assert os.path.exists("requirements.txt")
+    if "linux" in sys.platform:
+        assert 'small-fake-a==0.1 ; "linux" in sys_platform' in out.stderr
+    elif "win32" in sys.platform:
+        assert 'small-fake-a==0.2 ; "win32" in sys_platform' in out.stderr
+    elif "darwin" in sys.platform:
+        assert 'small-fake-a==0.3b1 ; "darwin" in sys_platform' in out.stderr
+
+
 @pytest.mark.parametrize(
     "options, expected_output_file",
     [