Fix invocation of shapeworks commands #216
Merged
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
When swcc switched to relative downloads only (ignoring "../" in path values), the invocation of shapeworks commands was broken. To compensate, before invoking the shapeworks command, the project file is edited to remove instances of "../".
Additionally, #214 made a change to the dockerfile that doesn't actually work. I thought I had found a static url that gave us the download we needed, but that tarball wasn't built, and the invocation of the commands was broken for that reason as well. This PR undoes that change.