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Fix file output #345

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geographika
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Attempt to fix #344
This requires a (root) output folder to already exist when outputting to a folder. Without additional parameters there is no consistent way to tell if a string is a folder or a file across multiple OSs.

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After discussions with @jansule a better approach would be to check to see if the input is a folder and if this is the case then assume the output is also a folder. If the input is a file the output will be also.

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Conversion to an output file writes to a directory instead of a file
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