propose_migration.sh

#!/usr/bin/env bash
set -o errexit
set -o nounset
set -o xtrace

# this script generates a proposed database changelog file based on your current JPA classes

## destroy and recreate both databases
if [ "${CIRCLECI-false}" = "true" ]; then
    dropdb -U postgres webservice_test || true
    dropdb -U postgres webservice_test_proposed || true
    createdb -U postgres webservice_test -O dockstore || true
    createdb -U postgres webservice_test_proposed -O dockstore || true
else
    ## uncomment/comment this section if database is running locally on postgres
    sudo -i -u postgres dropdb webservice_test || true # comment this line if you want to diff with an already loaded db dump
    sudo -i -u postgres dropdb webservice_test_proposed || true
    sudo -i -u postgres createdb webservice_test -O dockstore || true # comment this line if you want to diff with an already loaded db dump
    sudo -i -u postgres createdb webservice_test_proposed -O dockstore || true
    ## uncomment/comment this section if running on docker
#    docker exec -it -u postgres -e PGPASSWORD=dockstore postgres1 dropdb webservice_test || true
#    docker exec -it -u postgres -e PGPASSWORD=dockstore postgres1 dropdb webservice_test_proposed || true
#    docker exec -it -u postgres -e PGPASSWORD=dockstore postgres1 psql -c "create database webservice_test with owner = dockstore;" || true
#    docker exec -it -u postgres -e PGPASSWORD=dockstore postgres1 psql -c "create database webservice_test_proposed with owner = dockstore;" || true
fi
rm dockstore-webservice/target/detected-migrations.xml || true

## load up the old database based on current migration
rm dockstore-webservice/target/dockstore-webservice-*sources.jar || true
# java -jar dockstore-webservice/target/dockstore-webservice-*.jar db migrate dockstore-integration-testing/src/test/resources/dockstore.yml --include 1.3.0.consistency,1.4.0,1.5.0,1.6.0,1.7.0,1.8.0,1.9.0,1.10.0,1.11.0,1.12.0,1.13.0,1.14.0,1.15.0,1.16.0 # uncomment this line if you want to diff with an already loaded db dump
java -jar dockstore-webservice/target/dockstore-webservice-*.jar db migrate dockstore-integration-testing/src/test/resources/dockstore.yml --include 1.3.0.generated,1.4.0,1.5.0,1.6.0,1.7.0,1.8.0,1.9.0,1.10.0,1.11.0,1.12.0,1.13.0,1.14.0,1.15.0,1.16.0 # uncomment this line if you want to generate a DB from scratch with migrations

## create the new database based on JPA (ugly, should really create a proper dw command if this works)
## remove timeout for mac devices, will have to break manually
timeout 15 java -Ddw.database.url=jdbc:postgresql://localhost:5432/webservice_test_proposed -Ddw.database.properties.hibernate.hbm2ddl.auto=create -jar dockstore-webservice/target/dockstore-webservice-*.jar server dockstore-integration-testing/src/test/resources/dockstore.yml || true

cd dockstore-webservice && mvn liquibase:diff

echo 'examine proposed changes at `dockstore-webservice/target/detected-migrations.xml`'