local-docker-compose.yaml

# docker compose -f local-docker-compose.yaml --env-file LNX.env up --build
version: '2.4'
x-net: &net
  networks:
    - main
services:
  db:
    <<: *net
    image: datajoint/mysql:${MYSQL_TAG}
    environment:
      - MYSQL_ROOT_PASSWORD=simple
    # ports:
    #   - "3306:3306"
    ## To persist MySQL data
    # volumes:
    #   - ./mysql/data:/var/lib/mysql
  minio:
    <<: *net
    environment:
      - MINIO_ACCESS_KEY=datajoint
      - MINIO_SECRET_KEY=datajoint
    image: minio/minio:$MINIO_VER
    # ports:
    #   - "9000:9000"
    # To persist MinIO data and config
    # volumes:
    #   - ./minio/data:/data
    #   - ./minio/config:/root/.minio
    command: server /data
    healthcheck:
      test: ["CMD", "curl", "--fail", "http://minio:9000/minio/health/live"]
      timeout: 5s
      retries: 60
      interval: 1s
  fakeservices.datajoint.io:
    <<: *net
    image: datajoint/nginx:v0.2.4
    environment:
    - ADD_db_TYPE=DATABASE
    - ADD_db_ENDPOINT=db:3306
    - ADD_minio_TYPE=MINIO
    - ADD_minio_ENDPOINT=minio:9000
    - ADD_minio_PORT=80 # allow unencrypted connections
    - ADD_minio_PREFIX=/datajoint
    - ADD_browser_TYPE=MINIOADMIN
    - ADD_browser_ENDPOINT=minio:9000
    - ADD_browser_PORT=80 # allow unencrypted connections
    ports:
      - "80:80"
      - "443:443"
      - "3306:3306"
    depends_on:
      db:
        condition: service_healthy
      minio:
        condition: service_healthy
  app:
    <<: *net
    environment:
    - DJ_HOST=fakeservices.datajoint.io
    - DJ_USER=root
    - DJ_PASS=simple
    - DJ_TEST_HOST=fakeservices.datajoint.io
    - DJ_TEST_USER=datajoint
    - DJ_TEST_PASSWORD=datajoint
    - S3_ENDPOINT=fakeservices.datajoint.io
    - S3_ACCESS_KEY=datajoint
    - S3_SECRET_KEY=datajoint
    - S3_BUCKET=datajoint.test
    - MATLAB_USER
    - MATLAB_LICENSE
    - JUPYTER_PASSWORD=datajoint
    - DISPLAY
    image: raphaelguzman/matlab:${MATLAB_VERSION}-GUI
    depends_on:
      fakeservices.datajoint.io:
        condition: service_healthy
    ports:
      - "8888:8888"
    user: ${MATLAB_UID}:${MATLAB_GID}
    working_dir: /home/muser
    command:
      - /bin/bash
      - -c
      - |
        set -e
        ORIG_DIR=$$(pwd)
        mkdir ~/Documents
        cd /src
        # package into toolbox, and install
        matlab -nodisplay -r "
          websave([tempdir 'GHToolbox.mltbx'],\
                  ['https://github.com/datajoint/GHToolbox' \
                   '/releases/download/' subsref(webread(['https://api.github.com/repos' \
                                                          '/datajoint/GHToolbox' \
                                                          '/releases/latest']),\
                                                 substruct('.', 'tag_name')) \
                   '/GHToolbox.mltbx']);\
          matlab.addons.toolbox.installToolbox([tempdir 'GHToolbox.mltbx']);\
          fid = fopen('README.md', 'r');\
          docs = fread(fid, '*char')';\
          fclose(fid);\
          ghtb.package('DataJoint',\
                       'Raphael Guzman',\
                       'raphael.h.guzman@gmail.com',\
                       ['Scientific workflow management framework built on top of a ' \
                        'relational database.'],\
                       docs,\
                       {'.vscode', '.git*', '*.env', '*.yaml', 'tests', 'mym', 'docs-parts',\
                        '*.txt', '*.prf', '*.md', 'notebook'},\
                       @() strjoin(arrayfun(@(x) num2str(x),\
                                            cell2mat(struct2cell(dj.version)),\
                                            'uni', false),\
                                   '.'),\
                       {'+dj', 'erd.m'});\
          matlab.addons.toolbox.installToolbox('DataJoint.mltbx');\
          addpath('tests');\
          savepath;\
          cd(tempdir);\
          dir(fileparts(which('erd')));\
          disp(dj.version);\
        "
        cd "$${ORIG_DIR}"
        # Copy preferences
        # cp /tmp/matlab.prf /home/muser/.matlab/${MATLAB_VERSION}/matlab.prf
        # Interactive Jupyter Notebook environment
        jupyter notebook
    mac_address: $MATLAB_HOSTID
    volumes:
      ## Dev mounts
      - .:/src
      - /tmp/.X11-unix:/tmp/.X11-unix:rw
      ## Additional mounts may go here
      # - ./notebook:/home/muser/notebooks
      # - ./matlab.prf:/tmp/matlab.prf
networks:
  main: