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Multiple Genbank structured comment warnings #4720

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peterjc opened this issue May 5, 2024 · 0 comments
Open

Multiple Genbank structured comment warnings #4720

peterjc opened this issue May 5, 2024 · 0 comments

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@peterjc
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peterjc commented May 5, 2024

Noted today while parsing mtDNA GenBank files from NCBI:

BiopythonParserWarning: Structured comment not parsed for NC_037500. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_037499. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_037498. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MF957173. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MF957172. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MF957171. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MN531849. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MN531848. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MN531847. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for MN531846. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_057214. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_057213. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_057212. Is it malformed?
BiopythonParserWarning: Structured comment not parsed for NC_057211. Is it malformed?

Running 7bd1038 - likely something the parser needs tweakign for, although it looks like just 4 cases.
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