p2_file_tree.txt

RESULT_AMPLICONSEQUENCING···········································································分析结果文件夹
├─1-OTUStats························································································整体去噪生成OTU的过程统计
│  │  Classified_stat_relative.png··································································每个样本各分类水平注释情况统计png图
│  │  feature-table.taxonomy.biom···································································OTU(features) biom格式的绝对丰度表
│  │  feature-table.taxonomy.even.txt·······························································均一化的OTU丰度表
│  │  feature-table.taxonomy.txt····································································OTU txt格式绝对丰度表
│  │
│  ├─1-Stats-demux··················································································序列样本拆分统计网页结果文件夹
│  │  │  demultiplex-summary.pdf····································································序列样本拆分统计图pdf格式
│  │  │  demultiplex-summary.png····································································序列样本拆分统计图png格式
│  │  │  demux.qzv··················································································序列样本拆分统计的qiime2结果展示文件
│  │  │  per-sample-fastq-counts.csv································································每个样本的raw reads数目表
│  │  │  quality-plot.html··········································································序列质量分统计图
│  │  └─Summary_请点此文件查看.html·······································································分析结果汇总网页
│  │  
│  ├─2-Stats-dada2··················································································dada2序列质控过程统计网页结果文件夹
│  │  │  stats-dada2.qzv············································································dada2序列质控过程统计qiime2结果展示文件
│  │  └─Summary_请点此文件查看.html·······································································分析结果汇总网页
│  │  
│  └─3-RepresentiveSequence·········································································OTU代表序列结果文件夹
│      │  dna-sequences.fasta·······································································OTU(feature)代表序列fasta格式
│      │  tree.rooted.nwk···········································································有根进化树nwk格式
│      │  tree.unrooted.nwk·········································································无根进化树nwk格式
│      └─rep-seqs···················································································代表序列网页结果文件夹
│          │  rep-seqs.qzv··········································································代表序列qiime2结果展示文件
│          └─Summary_请点此文件查看.html··································································分析结果汇总网页
│          
├─Group*_Result_AmpliconSequencing··································································第*种分组方案的分析结果文件夹
│  │  mapping_file.txt··············································································元文件
│  │  Result_README.pdf·············································································结果目录查看指南
│  │  结题报告.html·····················································································网页结题报告
│  │
│  ├─1-VennAndFlower················································································维恩图和花瓣图结果文件夹
│  │      Group*_A_special_species.xls······························································A组特有的物种
│  │      Group*_B_special_species.xls······························································B组特有的物种
│  │      Group*_common_species.xls·································································所有分组共有的OTU及丰度
│  │      Group*_C_special_species.xls······························································C组特有的物种
│  │      Group*_Flower_plot.pdf····································································花瓣图
│  │      Group*_Venn_plot.png······································································维恩图
│  │
│  ├─2-AbundanceAnalysis············································································菌群物种丰度分析结果文件夹
│  │  ├─1-AbundanceSummary··········································································菌群物种丰度汇总文件夹
│  │  │  ├─1-AbundanceTable·········································································菌群物种丰度表文件夹
│  │  │  │  ├─1-Absolute············································································绝对丰度表文件夹
│  │  │  │  │      otu_table.Class.absolute.txt·····················································纲分类水平绝对丰度表
│  │  │  │  │      otu_table.Family.absolute.txt····················································科分类水平绝对丰度表
│  │  │  │  │      otu_table.Genus.absolute.txt·····················································属分类水平绝对丰度表
│  │  │  │  │      otu_table.Kingdom.absolute.txt···················································界分类水平绝对丰度表
│  │  │  │  │      otu_table.Order.absolute.txt·····················································目分类水平绝对丰度表
│  │  │  │  │      otu_table.Phylum.absolute.txt····················································门分类水平绝对丰度表
│  │  │  │  │      otu_table.Species.absolute.txt···················································种分类水平绝对丰度表
│  │  │  │  │
│  │  │  │  ├─2-Relative············································································相对丰度表文件夹
│  │  │  │  │      otu_table.Class.relative.txt·····················································纲分类水平相对丰度表
│  │  │  │  │      otu_table.Family.relative.txt····················································科分类水平相对丰度表
│  │  │  │  │      otu_table.Genus.relative.txt·····················································属分类水平相对丰度表
│  │  │  │  │      otu_table.Kingdom.relative.txt···················································界分类水平相对丰度表
│  │  │  │  │      otu_table.Order.relative.txt·····················································目分类水平相对丰度表
│  │  │  │  │      otu_table.Phylum.relative.txt····················································门分类水平相对丰度表
│  │  │  │  │      otu_table.Species.relative.txt···················································种分类水平相对丰度表
│  │  │  │  │
│  │  │  │  └─3-CollapsedStats······································································每个分类水平的绝对丰度统计
│  │  │  │      ├─collapsed-Class···································································纲分类水平绝对丰度统计网页结果文件夹
│  │  │  │      │  │  collapsed-Class.qzv···························································纲分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │      │  │  feature-frequencies.pdf·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequencies.png·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequency-detail.csv··················································每个物种的总丰度统计表
│  │  │  │      │  │  sample-frequencies.pdf························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequencies.png························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequency-detail.csv···················································每个样本的总丰度统计表
│  │  │  │      │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │  │      │  │
│  │  │  │      ├─collapsed-Family··································································科分类水平绝对丰度统计网页结果文件夹
│  │  │  │      │  │  collapsed-Family.qzv··························································科分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │      │  │  feature-frequencies.pdf·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequencies.png·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequency-detail.csv··················································每个物种的总丰度统计表
│  │  │  │      │  │  sample-frequencies.pdf························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequencies.png························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequency-detail.csv···················································每个样本的总丰度统计表
│  │  │  │      │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │  │      │  │
│  │  │  │      ├─collapsed-Genus···································································属分类水平绝对丰度统计网页结果文件夹
│  │  │  │      │  │  collapsed-Genus.qzv···························································属分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │      │  │  feature-frequencies.pdf·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequencies.png·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequency-detail.csv··················································每个物种的总丰度统计表
│  │  │  │      │  │  sample-frequencies.pdf························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequencies.png························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequency-detail.csv···················································每个样本的总丰度统计表
│  │  │  │      │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │  │      │  │
│  │  │  │      ├─collapsed-Order···································································目分类水平绝对丰度统计网页结果文件夹
│  │  │  │      │  │  collapsed-Order.qzv···························································目分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │      │  │  feature-frequencies.pdf·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequencies.png·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequency-detail.csv··················································每个物种的总丰度统计表
│  │  │  │      │  │  sample-frequencies.pdf························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequencies.png························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequency-detail.csv···················································每个样本的总丰度统计表
│  │  │  │      │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │  │      │  │
│  │  │  │      ├─collapsed-Phylum··································································门分类水平绝对丰度统计网页结果文件夹
│  │  │  │      │  │  collapsed-Phylum.qzv··························································门分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │      │  │  feature-frequencies.pdf·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequencies.png·······················································每个物种的总丰度统计图
│  │  │  │      │  │  feature-frequency-detail.csv··················································每个物种的总丰度统计表
│  │  │  │      │  │  sample-frequencies.pdf························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequencies.png························································每个样本的总丰度统计图
│  │  │  │      │  │  sample-frequency-detail.csv···················································每个样本的总丰度统计表
│  │  │  │      │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │  │      │  │
│  │  │  │      └─collapsed-Species·································································种分类水平绝对丰度统计网页结果文件夹
│  │  │  │          │  collapsed-Species.qzv························································种分类水平绝对丰度统计qiime2结果展示文件
│  │  │  │          │  feature-frequencies.pdf······················································每个物种的总丰度统计图
│  │  │  │          │  feature-frequencies.png······················································每个物种的总丰度统计图
│  │  │  │          │  feature-frequency-detail.csv·················································每个物种的总丰度统计表
│  │  │  │          │  sample-frequencies.pdf·······················································每个样本的总丰度统计图
│  │  │  │          │  sample-frequencies.png·······················································每个样本的总丰度统计图
│  │  │  │          │  sample-frequency-detail.csv··················································每个样本的总丰度统计表
│  │  │  │          │  Summary_请点此文件查看.html·························································分析结果汇总网页
│  │  │  │          │
│  │  │  ├─2-Barplots···············································································丰度堆积百分比条形图结果文件夹
│  │  │  │  ├─taxa-bar-plots-top20··································································丰度最高的20个物种条形图文件夹
│  │  │  │  │      Class_Group*_ordered_barplot.pdf·················································纲水平据分组排序的条形图
│  │  │  │  │      Family_Group*_ordered_barplot.pdf················································科水平据分组排序的条形图
│  │  │  │  │      Genus_Group*_ordered_barplot.pdf·················································属水平据分组排序的条形图
│  │  │  │  │      Order_Group*_ordered_barplot.pdf·················································目水平据分组排序的条形图
│  │  │  │  │      Phylum_Group*_ordered_barplot.pdf················································门水平据分组排序的条形图
│  │  │  │  │      Species_Group*_ordered_barplot.pdf···············································种水平据分组排序的条形图
│  │  │  │  │
│  │  │  │  ├─taxa-bar-plots-top20-group-mean·······················································丰度最高的20物种分组均值条形图
│  │  │  │  │      Group*_Class_mean_barplot.pdf····················································纲水平分组均值条形图
│  │  │  │  │      Group*_Family_mean_barplot.pdf···················································科水平分组均值条形图
│  │  │  │  │      Group*_Genus_mean_barplot.pdf····················································属水平分组均值条形图
│  │  │  │  │      Group*_Order_mean_barplot.pdf····················································目水平分组均值条形图
│  │  │  │  │      Group*_Phylum_mean_barplot.pdf···················································门水平分组均值条形图
│  │  │  │  │      Group*_Species_mean_barplot.pdf··················································种水平分组均值条形图
│  │  │  │  │
│  │  │  │  └─taxa-bar-plots_Qiime2·································································物种相对丰度堆积柱形图网页结果文件夹
│  │  │  │      │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │  │  │      │  taxa-bar-plots.qzv·······························································物种相对丰度堆积柱形图qiime2结果展示文件
│  │  │  │      │
│  │  │  └─3-Heatmaps···············································································丰度(log10)热图结果文件夹
│  │  │      ├─Heatmap-Qiime2·······································································Qiime2画的样本聚类热图
│  │  │      │  ├─Group*-table-Class.1000···························································纲分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │  │  │  feature-table-heatmap.png·····················································热图+聚类图png格式
│  │  │      │  │  │  feature-table-heatmap.svg·····················································热图+聚类图svg格式
│  │  │      │  │  │  Group*-table-Class.1000.qzv···················································纲分类水平热图+聚类图qiime2结果展示文件
│  │  │      │  │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │      │  │  │
│  │  │      │  ├─Group*-table-Family.1000··························································科分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │  │  │  feature-table-heatmap.png·····················································热图+聚类图png格式
│  │  │      │  │  │  feature-table-heatmap.svg·····················································热图+聚类图svg格式
│  │  │      │  │  │  Group*-table-Family.1000.qzv··················································科分类水平热图+聚类图qiime2结果展示文件
│  │  │      │  │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │      │  │  │
│  │  │      │  ├─Group*-table-Genus.1000···························································属分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │  │  │  feature-table-heatmap.png·····················································热图+聚类图png格式
│  │  │      │  │  │  feature-table-heatmap.svg·····················································热图+聚类图svg格式
│  │  │      │  │  │  Group*-table-Genus.1000.qzv···················································属分类水平热图+聚类图qiime2结果展示文件
│  │  │      │  │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │      │  │  │
│  │  │      │  ├─Group*-table-Order.1000···························································目分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │  │  │  feature-table-heatmap.png·····················································热图+聚类图png格式
│  │  │      │  │  │  feature-table-heatmap.svg·····················································热图+聚类图svg格式
│  │  │      │  │  │  Group*-table-Order.1000.qzv···················································目分类水平热图+聚类图qiime2结果展示文件
│  │  │      │  │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │      │  │  │
│  │  │      │  ├─Group*-table-Phylum.1000··························································门分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │  │  │  feature-table-heatmap.png·····················································热图+聚类图png格式
│  │  │      │  │  │  feature-table-heatmap.svg·····················································热图+聚类图svg格式
│  │  │      │  │  │  Group*-table-Phylum.1000.qzv··················································门分类水平热图+聚类图qiime2结果展示文件
│  │  │      │  │  │  Summary_请点此文件查看.html··························································分析结果汇总网页
│  │  │      │  │  │
│  │  │      │  └─Group*-table-Species.1000·························································种分类水平物种绝对丰度热图+聚类图网页结果文件夹
│  │  │      │      │  feature-table-heatmap.png····················································热图+聚类图png格式
│  │  │      │      │  feature-table-heatmap.svg····················································热图+聚类图svg格式
│  │  │      │      │  Group*-table-Species.1000.qzv················································种分类水平热图+聚类图qiime2结果展示文件
│  │  │      │      │  Summary_请点此文件查看.html·························································分析结果汇总网页
│  │  │      │      │
│  │  │      └─Heatmap_top20········································································丰度前20物种不聚类的丰度热图
│  │  │          ├─Class············································································纲分类水平分析结果文件夹
│  │  │          │      abundance_heatmap.pdf·······················································样本不聚类（按分组排序）的丰度热图
│  │  │          │
│  │  │          ├─Family···········································································科分类水平分析结果文件夹
│  │  │          │      abundance_heatmap.pdf·······················································样本不聚类（按分组排序）的丰度热图
│  │  │          │
│  │  │          ├─Genus············································································属分类水平分析结果文件夹
│  │  │          │      abundance_heatmap.pdf·······················································样本不聚类（按分组排序）的丰度热图
│  │  │          │
│  │  │          ├─Order············································································目分类水平分析结果文件夹
│  │  │          │      abundance_heatmap.pdf·······················································样本不聚类（按分组排序）的丰度热图
│  │  │          │
│  │  │          ├─Phylum···········································································门分类水平分析结果文件夹
│  │  │          │      abundance_heatmap.pdf·······················································样本不聚类（按分组排序）的丰度热图
│  │  │          │
│  │  │          └─Species··········································································种分类水平分析结果文件夹
│  │  │                  abundance_heatmap.pdf······················································样本不聚类（按分组排序）的丰度热图
│  │  │
│  │  └─2-AbundanceComparison·······································································菌群组间丰度比较结果文件夹
│  │      ├─1-ANCOM·················································································ANCOM分析的结果文件夹
│  │      │  ├─Group*.ANCOM.Class···································································纲分类水平ANCOM分析的网页结果文件夹
│  │      │  │  │  Group*.ANCOM.Class.qzv···························································纲分类水平ANCOM分析qiime2结果展示文件
│  │      │  │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │      │  │  │
│  │      │  ├─Group*.ANCOM.Family··································································科分类水平ANCOM分析的网页结果文件夹
│  │      │  │  │  Group*.ANCOM.Family.qzv··························································科分类水平ANCOM分析qiime2结果展示文件
│  │      │  │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │      │  │  │
│  │      │  ├─Group*.ANCOM.Genus···································································属分类水平ANCOM分析的网页结果文件夹
│  │      │  │  │  Group*.ANCOM.Genus.qzv···························································属分类水平ANCOM分析qiime2结果展示文件
│  │      │  │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │      │  │  │
│  │      │  ├─Group*.ANCOM.Order···································································目分类水平ANCOM分析的网页结果文件夹
│  │      │  │  │  Group*.ANCOM.Order.qzv···························································目分类水平ANCOM分析qiime2结果展示文件
│  │      │  │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │      │  │  │
│  │      │  ├─Group*.ANCOM.Phylum··································································门分类水平ANCOM分析的网页结果文件夹
│  │      │  │  │  Group*.ANCOM.Phylum.qzv··························································门分类水平ANCOM分析qiime2结果展示文件
│  │      │  │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │      │  │  │
│  │      │  └─Group*.ANCOM.Species·································································种分类水平ANCOM分析的网页结果文件夹
│  │      │      │  Group*.ANCOM.Species.qzv························································种分类水平ANCOM分析qiime2结果展示文件
│  │      │      │  Summary_请点此文件查看.html····························································分析结果汇总网页
│  │      │      │
│  │      ├─2-ANOVA·················································································ANOVA分析结果文件夹
│  │      │      ANOVA_Group*_DiffAbundance_Class.txt···············································纲分类水平ANOVA分析结果
│  │      │      ANOVA_Group*_DiffAbundance_Family.txt··············································科分类水平ANOVA分析结果
│  │      │      ANOVA_Group*_DiffAbundance_Genus.txt···············································属分类水平ANOVA分析结果
│  │      │      ANOVA_Group*_DiffAbundance_Order.txt···············································目分类水平ANOVA分析结果
│  │      │      ANOVA_Group*_DiffAbundance_Phylum.txt··············································门分类水平ANOVA分析结果
│  │      │      ANOVA_Group*_DiffAbundance_Species.txt·············································种分类水平ANOVA分析结果
│  │      │
│  │      ├─3-KruskalWallis·········································································Kruskal-Wallis分析的结果文件夹
│  │      │      kruskal_wallis_Group*_DiffAbundance_Class.txt······································纲分类水平Kruskal-Wallis分析的结果
│  │      │      kruskal_wallis_Group*_DiffAbundance_Family.txt·····································科分类水平Kruskal-Wallis分析的结果
│  │      │      kruskal_wallis_Group*_DiffAbundance_Genus.txt······································属分类水平Kruskal-Wallis分析的结果
│  │      │      kruskal_wallis_Group*_DiffAbundance_Order.txt······································目分类水平Kruskal-Wallis分析的结果
│  │      │      kruskal_wallis_Group*_DiffAbundance_Phylum.txt·····································门分类水平Kruskal-Wallis分析的结果
│  │      │      kruskal_wallis_Group*_DiffAbundance_Species.txt····································种分类水平Kruskal-Wallis分析的结果
│  │      │
│  │      ├─4-LEfSe·················································································各分类水平LEfSe分析结果文件夹
│  │      │  ├─Class················································································纲分类水平分析结果文件夹
│  │      │  │      Group*_Class_lefse.txt··························································LEfSe分析数据数据文件
│  │      │  │      Group*_Class_lefse_LDA2.cladogram.pdf···········································LDA>2的cladogram图
│  │      │  │      Group*_Class_lefse_LDA2.LDA.txt·················································LDA>2的LEfSe分析结果文件
│  │      │  │      Group*_Class_lefse_LDA2.lefseinput.txt··········································LDA>2的LEfSe分析中间文件
│  │      │  │      Group*_Class_lefse_LDA2.pdf·····················································LDA>2的LEfSe分析柱形图
│  │      │  │      Group*_Class_lefse_LDA4.cladogram.pdf···········································LDA>4的cladogram图
│  │      │  │      Group*_Class_lefse_LDA4.LDA.txt·················································LDA>4的LEfSe分析结果文件
│  │      │  │      Group*_Class_lefse_LDA4.lefseinput.txt··········································LDA>4的LEfSe分析中间文件
│  │      │  │      Group*_Class_lefse_LDA4.pdf·····················································LDA>4的LEfSe分析柱形图
│  │      │  │      otu_table.Class.relative.txt····················································纲分类水平相对丰度表
│  │      │  │
│  │      │  ├─Family···············································································科分类水平分析结果文件夹
│  │      │  │      Group*_Family_lefse.txt·························································LEfSe分析数据数据文件
│  │      │  │      Group*_Family_lefse_LDA2.cladogram.pdf··········································LDA>2的cladogram图
│  │      │  │      Group*_Family_lefse_LDA2.LDA.txt················································LDA>2的LEfSe分析结果文件
│  │      │  │      Group*_Family_lefse_LDA2.lefseinput.txt·········································LDA>2的LEfSe分析中间文件
│  │      │  │      Group*_Family_lefse_LDA2.pdf····················································LDA>2的LEfSe分析柱形图
│  │      │  │      Group*_Family_lefse_LDA4.cladogram.pdf··········································LDA>4的cladogram图
│  │      │  │      Group*_Family_lefse_LDA4.LDA.txt················································LDA>4的LEfSe分析结果文件
│  │      │  │      Group*_Family_lefse_LDA4.lefseinput.txt·········································LDA>4的LEfSe分析中间文件
│  │      │  │      Group*_Family_lefse_LDA4.pdf····················································LDA>4的LEfSe分析柱形图
│  │      │  │      otu_table.Family.relative.txt···················································科分类水平相对丰度表
│  │      │  │
│  │      │  ├─Genus················································································属分类水平分析结果文件夹
│  │      │  │      Group*_Genus_lefse.txt··························································LEfSe分析数据数据文件
│  │      │  │      Group*_Genus_lefse_LDA2.cladogram.pdf···········································LDA>2的cladogram图
│  │      │  │      Group*_Genus_lefse_LDA2.LDA.txt·················································LDA>2的LEfSe分析结果文件
│  │      │  │      Group*_Genus_lefse_LDA2.lefseinput.txt··········································LDA>2的LEfSe分析中间文件
│  │      │  │      Group*_Genus_lefse_LDA2.pdf·····················································LDA>2的LEfSe分析柱形图
│  │      │  │      Group*_Genus_lefse_LDA4.cladogram.pdf···········································LDA>4的cladogram图
│  │      │  │      Group*_Genus_lefse_LDA4.LDA.txt·················································LDA>4的LEfSe分析结果文件
│  │      │  │      Group*_Genus_lefse_LDA4.lefseinput.txt··········································LDA>4的LEfSe分析中间文件
│  │      │  │      Group*_Genus_lefse_LDA4.pdf·····················································LDA>4的LEfSe分析柱形图
│  │      │  │      otu_table.Genus.relative.txt····················································属分类水平相对丰度表
│  │      │  │
│  │      │  ├─Order················································································目分类水平分析结果文件夹
│  │      │  │      Group*_Order_lefse.txt··························································LEfSe分析数据数据文件
│  │      │  │      Group*_Order_lefse_LDA2.cladogram.pdf···········································LDA>2的cladogram图
│  │      │  │      Group*_Order_lefse_LDA2.LDA.txt·················································LDA>2的LEfSe分析结果文件
│  │      │  │      Group*_Order_lefse_LDA2.lefseinput.txt··········································LDA>2的LEfSe分析中间文件
│  │      │  │      Group*_Order_lefse_LDA2.pdf·····················································LDA>2的LEfSe分析柱形图
│  │      │  │      Group*_Order_lefse_LDA4.cladogram.pdf···········································LDA>4的cladogram图
│  │      │  │      Group*_Order_lefse_LDA4.LDA.txt·················································LDA>4的LEfSe分析结果文件
│  │      │  │      Group*_Order_lefse_LDA4.lefseinput.txt··········································LDA>4的LEfSe分析中间文件
│  │      │  │      Group*_Order_lefse_LDA4.pdf·····················································LDA>4的LEfSe分析柱形图
│  │      │  │      otu_table.Order.relative.txt····················································目分类水平相对丰度表
│  │      │  │
│  │      │  ├─Phylum···············································································门分类水平分析结果文件夹
│  │      │  │      Group*_Phylum_lefse.txt·························································LEfSe分析数据数据文件
│  │      │  │      Group*_Phylum_lefse_LDA2.cladogram.pdf··········································LDA>2的cladogram图
│  │      │  │      Group*_Phylum_lefse_LDA2.LDA.txt················································LDA>2的LEfSe分析结果文件
│  │      │  │      Group*_Phylum_lefse_LDA2.lefseinput.txt·········································LDA>2的LEfSe分析中间文件
│  │      │  │      Group*_Phylum_lefse_LDA2.pdf····················································LDA>2的LEfSe分析柱形图
│  │      │  │      Group*_Phylum_lefse_LDA4.cladogram.pdf··········································LDA>4的cladogram图
│  │      │  │      Group*_Phylum_lefse_LDA4.LDA.txt················································LDA>4的LEfSe分析结果文件
│  │      │  │      Group*_Phylum_lefse_LDA4.lefseinput.txt·········································LDA>4的LEfSe分析中间文件
│  │      │  │      Group*_Phylum_lefse_LDA4.pdf····················································LDA>4的LEfSe分析柱形图
│  │      │  │      otu_table.Phylum.relative.txt···················································门分类水平相对丰度表
│  │      │  │
│  │      │  └─Species··············································································种分类水平分析结果文件夹
│  │      │          Group*_Species_lefse.txt·······················································LEfSe分析数据数据文件
│  │      │          Group*_Species_lefse_LDA2.cladogram.pdf········································LDA>2的cladogram图
│  │      │          Group*_Species_lefse_LDA2.LDA.txt··············································LDA>2的LEfSe分析结果文件
│  │      │          Group*_Species_lefse_LDA2.lefseinput.txt·······································LDA>2的LEfSe分析中间文件
│  │      │          Group*_Species_lefse_LDA2.pdf··················································LDA>2的LEfSe分析柱形图
│  │      │          Group*_Species_lefse_LDA4.cladogram.pdf········································LDA>4的cladogram图
│  │      │          Group*_Species_lefse_LDA4.LDA.txt··············································LDA>4的LEfSe分析结果文件
│  │      │          Group*_Species_lefse_LDA4.lefseinput.txt·······································LDA>4的LEfSe分析中间文件
│  │      │          Group*_Species_lefse_LDA4.pdf··················································LDA>4的LEfSe分析柱形图
│  │      │          otu_table.Species.relative.txt·················································种分类水平相对丰度表
│  │      │
│  │      └─5-DESeq2················································································各分类水平DESeq2组间丰度比较结果文件夹
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Class.txt·····························纲分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Family.txt····························科分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Genus.txt·····························属分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Order.txt·····························目分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Phylum.txt····························门分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_B_DiffAbundance_Species.txt···························种分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Class.txt·····························纲分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Family.txt····························科分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Genus.txt·····························属分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Order.txt·····························目分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Phylum.txt····························门分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_A_and_C_DiffAbundance_Species.txt···························种分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Class.txt·····························纲分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Family.txt····························科分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Genus.txt·····························属分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Order.txt·····························目分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Phylum.txt····························门分类水平对应分组间DESeq2丰度比较结果文件
│  │              DESeq2_Group*_Between_B_and_C_DiffAbundance_Species.txt···························种分类水平对应分组间DESeq2丰度比较结果文件
│  │
│  ├─3-AlphaDiversity···············································································α多样性分析结果文件夹
│  │  ├─1-AlphaDiversitySummary·····································································α多样性指数汇总文件夹
│  │  │      alpha-summary.tsv······································································α多样性指数汇总表格
│  │  │      Group*_alpha_diversity_faith_pd.boxplot.pdf············································各分组Faith-PD箱线图
│  │  │      Group*_alpha_diversity_observed_otus.boxplot.pdf·······································各分组观测OTU数箱线图
│  │  │      Group*_alpha_diversity_shannon.boxplot.pdf·············································各分组香农指数箱线图
│  │  │
│  │  ├─2-AlphaRarefaction··········································································稀释性曲线结果文件夹
│  │  │  ├─alpha-rarefaction-ggplot2································································用R语言ggplot2包画的稀释性曲线
│  │  │  │      faith_pd_rarefaction_curve.pdf······················································faith_pd稀释性曲线
│  │  │  │      observed_otus_rarefaction_curve.pdf·················································观测OTU数稀释性曲线
│  │  │  │      shannon_rarefaction_curve.pdf·······················································香农指数稀释性曲线
│  │  │  │
│  │  │  └─alpha-rarefaction-Qiime2·································································用Qiime2画的稀释性曲线
│  │  │      │  alpha-rarefaction.qzv·······························································稀释性曲线qiime2结果展示文件
│  │  │      │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │  │      │
│  │  └─3-SignificanceAnalysis······································································α多样性组间差异显著性分析结果文件夹
│  │      ├─1-Wilcox_Test···········································································α多样性组间差异Wilcox分析结果文件夹
│  │      │      alpha_Group*_wilcox_compare_results.txt············································对应分组方式的α多样性组间差异Wilcox分析结果
│  │      │      chao1_Group*_wilcox_compare_boxplot.pdf············································对应分组方式的chao1组间差异Wilcox分析结果
│  │      │      chao1_Group*_wilcox_compare_boxplot.png············································对应分组方式的chao1组间差异Wilcox分析结果
│  │      │      faith_pd_Group*_wilcox_compare_boxplot.pdf·········································对应分组方式的Faith_PD组间差异Wilcox分析结果
│  │      │      faith_pd_Group*_wilcox_compare_boxplot.png·········································对应分组方式的Faith_PD组间差异Wilcox分析结果
│  │      │      observed_otus_Group*_wilcox_compare_boxplot.pdf····································对应分组方式的observed_otus组间差异Wilcox分析结果
│  │      │      observed_otus_Group*_wilcox_compare_boxplot.png····································对应分组方式的observed_otus组间差异Wilcox分析结果
│  │      │      shannon_Group*_wilcox_compare_boxplot.pdf··········································对应分组方式的shannon组间差异Wilcox分析结果
│  │      │      shannon_Group*_wilcox_compare_boxplot.png··········································对应分组方式的shannon组间差异Wilcox分析结果
│  │      │
│  │      └─2-Kruskal_Wallis········································································α多样性组间差异Kruskal_Wallis分析结果文件夹
│  │          ├─faith-pd-group-significance·························································Faith-PD组间差异分析网页结果文件夹
│  │          │  │  faith-pd-group-significance.qzv·················································Faith-PD组间比较qiime2展示文件
│  │          │  │  Summary_请点此文件查看.html····························································分析结果汇总网页
│  │          │  │
│  │          ├─observed_otus-group-significance····················································观测OTUs组间差异分析网页结果文件夹
│  │          │  │  observed_otus-group-significance.qzv············································观测OTUs组间比较结果qiime2结果展示文件
│  │          │  │  Summary_请点此文件查看.html····························································分析结果汇总网页
│  │          │  │
│  │          └─shannon-group-significance··························································香农指数组间差异分析网页结果文件夹
│  │              │  shannon-group-significance.qzv·················································香农指数组间比较qiime2结果展示文件
│  │              └─Summary_请点此文件查看.html···························································分析结果汇总网页
│  │              
│  ├─4-BetaDiversity················································································β多样性分析结果文件夹
│  │  ├─1-BetaDiversitySummary······································································β多样性指数汇总文件夹
│  │  │      BetaDiversity_heatmap.png······························································三个β多样性指数热图
│  │  │      bray_curtis_betadiversity_summary.pdf··················································bray_curtis距离可视化热图
│  │  │      bray_curtis_matrix.txt·································································bray_curtis距离矩阵
│  │  │      unweighted_unifrac_betadiversity_summary.pdf···········································非加权unifrac距离可视化热图
│  │  │      unweighted_unifrac_matrix.txt··························································非加权unifrac距离矩阵
│  │  │      weighted_unifrac_betadiversity_summary.pdf·············································加权unifrac距离可视化热图
│  │  │      weighted_unifrac_matrix.txt····························································加权unifrac距离矩阵
│  │  │
│  │  ├─2-PCoA······················································································PCoA分析结果文件夹
│  │  │  ├─PCoA-Phyloseq············································································用R语言Phyloseq包分析的PCoA结果文件夹
│  │  │  │      Group*_bray_curtis_PCoA_2D.ord.txt··················································基于bray_curtis的PCoA分析坐标文件
│  │  │  │      Group*_bray_curtis_PCoA_2D.pdf······················································基于bray_curtis的PCoA分析2D图
│  │  │  │      Group*_bray_curtis_PCoA_2D_without_labels.pdf·······································基于bray_curtis的PCoA分析没有置信椭圆的2D图
│  │  │  │      Group*_bray_curtis_PCoA_3D.pdf······················································基于bray_curtis的PCoA分析3D图
│  │  │  │      Group*_unweighted_unifrac_PCoA_2D.ord.txt···········································基于非加权unifrac的PCoA分析坐标文件
│  │  │  │      Group*_unweighted_unifrac_PCoA_2D.pdf···············································基于非加权unifrac的PCoA分析2D图
│  │  │  │      Group*_unweighted_unifrac_PCoA_2D_without_labels.pdf································基于非加权unifrac的PCoA分析没有置信椭圆的2D图
│  │  │  │      Group*_unweighted_unifrac_PCoA_3D.pdf···············································基于非加权unifrac的PCoA分析3D图
│  │  │  │      Group*_weighted_unifrac_PCoA_2D.ord.txt·············································基于加权unifrac的PCoA分析坐标文件
│  │  │  │      Group*_weighted_unifrac_PCoA_2D.pdf·················································基于加权unifrac的PCoA分析2D图
│  │  │  │      Group*_weighted_unifrac_PCoA_2D_without_labels.pdf··································基于加权unifrac的PCoA分析没有置信椭圆的2D图
│  │  │  │      Group*_weighted_unifrac_PCoA_3D.pdf·················································基于加权unifrac的PCoA分析3D图
│  │  │  │
│  │  │  └─PCoA-Qiime2··············································································用Qiime2分析的PCoA结果文件夹
│  │  │      ├─bray_curtis_emperor··································································基于bray_curtis的PCoA分析结果网页文件夹
│  │  │      │  │  bray_curtis_emperor.qzv··························································基于bray_curtis的PCoA分析qiime2结果展示文件
│  │  │      │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │  │      │  │
│  │  │      ├─unweighted_unifrac_emperor···························································基于非加权Unifra的PCoA分析结果网页文件夹
│  │  │      │  │  Summary_请点此文件查看.html·····························································分析结果汇总网页
│  │  │      │  │  unweighted_unifrac_emperor.qzv···················································基于非加权Unifrac的PCoA qiime2结果展示文件
│  │  │      │  │
│  │  │      └─weighted_unifrac_emperor·····························································基于加权Unifrac的PCoA分析结果网页文件夹
│  │  │          │  Summary_请点此文件查看.html····························································分析结果汇总网页
│  │  │          └─weighted_unifrac_emperor.qzv····················································基于加权Unifrac的PCoA qiime2结果展示文件
│  │  │          
│  │  ├─3-NMDS······················································································NMDS分析结果文件夹
│  │  │      Group*_bray_curtis_NMDS.ord.txt························································基于bray_curtis的NMDS分析坐标文件
│  │  │      Group*_bray_curtis_NMDS.pdf····························································基于bray_curtis的NMDS分析2D图
│  │  │      Group*_bray_curtis_NMDS_without_labels.pdf·············································基于bray_curtis的NMDS分析没有置信椭圆的2D图
│  │  │      Group*_unweighted_unifrac_NMDS.ord.txt·················································基于非加权UniFrac的NMDS分析坐标文件
│  │  │      Group*_unweighted_unifrac_NMDS.pdf·····················································基于非加权UniFrac的NMDS分析2D图
│  │  │      Group*_unweighted_unifrac_NMDS_without_labels.pdf······································基于非加权UniFrac的NMDS分析没有置信椭圆的2D图
│  │  │      Group*_weighted_unifrac_NMDS.ord.txt···················································基于加权UniFrac的NMDS分析坐标文件
│  │  │      Group*_weighted_unifrac_NMDS.pdf·······················································基于加权UniFrac的NMDS分析2D图
│  │  │      Group*_weighted_unifrac_NMDS_without_labels.pdf········································基于加权UniFrac的NMDS分析没有置信椭圆的2D图
│  │  │
│  │  ├─4-PLS-DA····················································································PLS-DA分析结果文件夹
│  │  │      Group* _ PLSDA_Variable_importance_in_projection.txt···································PLSDA各OTU的重要性（VIP）
│  │  │      Group*_PCA_plot.pdf····································································OTU丰度PCA图
│  │  │      Group*_PLSDA_AUC_plot.pdf······························································PLSDA分析AUC曲线
│  │  │      Group*_PLSDA_comp_plot.pdf·····························································PLSDA分析第一、二成分排序图
│  │  │
│  │  └─5-GroupSignificance·········································································基于距离矩阵的组间菌群结构差异分析
│  │      ├─bray_curtis-anosim-Group*-significance··················································基于bray_curtis的anosim组间菌群结构差异分析网页结果文件夹
│  │      │  │  anosim-pairwise.csv·································································anosim多重比较表格
│  │      │  │  bray_curtis-anosim-Group*-significance.qzv··········································基于bray_curtis的anosim分析结果qiime2结果展示文件
│  │      │  │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │      │  │
│  │      ├─bray_curtis-permanova-Group*-significance···············································基于bray_curtis的permanova组间菌群结构差异分析网页结果文件夹
│  │      │  │  bray_curtis-permanova-Group*-significance.qzv·······································基于bray_curtis的permanova分析结果qiime2结果展示文件
│  │      │  │  permanova-pairwise.csv······························································permanova多重比较表格
│  │      │  │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │      │  │
│  │      ├─unweighted_unifrac-anosim-Group*-significance···········································基于非加权unifrac的anosim组间菌群结构差异分析网页结果文件夹
│  │      │  │  anosim-pairwise.csv·································································anosim多重比较表格
│  │      │  │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │      │  │  unweighted_unifrac-anosim-Group*-significance.qzv···································基于非加权Unifrac的anosim qiime2结果展示文件
│  │      │  │
│  │      ├─unweighted_unifrac-permanova-Group*-significance········································基于非加权Unifrac的permanova组间菌群结构差异分析网页结果文件夹
│  │      │  │  permanova-pairwise.csv······························································permanova多重比较表格
│  │      │  │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │      │  │  unweighted_unifrac-permanova-Group*-significance.qzv································基于非加权Unifrac的permanova qiime2结果展示文件
│  │      │  │
│  │      ├─weighted_unifrac-anosim-Group*-significance·············································基于加权Unifrac的anosim组间菌群结构差异分析网页结果文件夹
│  │      │  │  anosim-pairwise.csv·································································anosim多重比较表格
│  │      │  │  Summary_请点此文件查看.html································································分析结果汇总网页
│  │      │  │  weighted_unifrac-anosim-Group*-significance.qzv·····································基于加权Unifrac的anosim qiime2结果展示文件
│  │      │  │
│  │      └─weighted_unifrac-permanova-Group*-significance··········································基于加权Unifrac的permanova组间菌群结构差异分析网页结果文件夹
│  │          │  permanova-pairwise.csv·····························································permanova多重比较表格
│  │          │  Summary_请点此文件查看.html·······························································分析结果汇总网页
│  │          │  weighted_unifrac-permanova-Group*-significance.qzv·································基于加权Unifrac的permanova qiime2结果展示文件
│  │          │
│  ├─5-Phylogenetics················································································进化树分析结果文件夹
│  │      Group*_phylogenetic_tree_heatmap.pdf······················································丰度较高OTU的进化树+丰度热图
│  │      tol_labels.txt············································································iTOL分析输入文件
│  │      tol_multibar.txt··········································································iTOL分析输入文件
│  │      tol_ranges.txt············································································iTOL分析输入文件
│  │      tree.rooted.nwk···········································································iTOL分析输入文件
│  │
│  ├─6-AssociationAnalysis··········································································关联分析
│  │  ├─1-RDA·······················································································RDA/CCA结果文件夹
│  │  │  ├─Class····················································································纲分类水平分析结果文件夹
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.bacteria.txt·················排除部分环境因子后各物种的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.envfit.txt···················排除部分环境因子后各环境因子的RDA坐标、解释方差及p值
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.sample.txt···················排除部分环境因子后各样本的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.pdf···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.png···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.pdf·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.png·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA.bacteria.txt·····························································各物种的RDA坐标
│  │  │  │      Group*_RDA.envfit.txt·······························································各环境因子的RDA坐标、解释方差及p值
│  │  │  │      Group*_RDA.sample.txt·······························································各样本的RDA坐标
│  │  │  │      Group*_RDA_bacteria_location_plot.pdf···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_bacteria_location_plot.png···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.pdf·················································RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.png·················································RDA分析样本和环境因子关系可视化图
│  │  │  │
│  │  │  ├─Family···················································································科分类水平分析结果文件夹
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.bacteria.txt·················排除部分环境因子后各物种的CCA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.envfit.txt···················排除部分环境因子后各环境因子的CCA坐标、解释方差及p值
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.sample.txt···················排除部分环境因子后各样本的CCA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.pdf···排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.png···排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.pdf·····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.png·····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │  │      Group*_CCA.bacteria.txt·····························································各物种的CCA坐标
│  │  │  │      Group*_CCA.envfit.txt·······························································各环境因子的CCA坐标、解释方差及p值
│  │  │  │      Group*_CCA.sample.txt·······························································各样本的CCA坐标
│  │  │  │      Group*_CCA_bacteria_location_plot.pdf···············································CCA分析物种和环境因子关系可视化图
│  │  │  │      Group*_CCA_bacteria_location_plot.png···············································CCA分析物种和环境因子关系可视化图
│  │  │  │      Group*_CCA_sample_location_plot.pdf·················································CCA分析样本和环境因子关系可视化图
│  │  │  │      Group*_CCA_sample_location_plot.png·················································CCA分析样本和环境因子关系可视化图
│  │  │  │
│  │  │  ├─Genus····················································································属分类水平分析结果文件夹
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.bacteria.txt·················排除部分环境因子后各物种的CCA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.envfit.txt···················排除部分环境因子后各环境因子的CCA坐标、解释方差及p值
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.sample.txt···················排除部分环境因子后各样本的CCA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.pdf···排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.png···排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.pdf·····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.png·····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │  │      Group*_CCA.bacteria.txt·····························································各物种的CCA坐标
│  │  │  │      Group*_CCA.envfit.txt·······························································各环境因子的CCA坐标、解释方差及p值
│  │  │  │      Group*_CCA.sample.txt·······························································各样本的CCA坐标
│  │  │  │      Group*_CCA_bacteria_location_plot.pdf···············································CCA分析物种和环境因子关系可视化图
│  │  │  │      Group*_CCA_bacteria_location_plot.png···············································CCA分析物种和环境因子关系可视化图
│  │  │  │      Group*_CCA_sample_location_plot.pdf·················································CCA分析样本和环境因子关系可视化图
│  │  │  │      Group*_CCA_sample_location_plot.png·················································CCA分析样本和环境因子关系可视化图
│  │  │  │
│  │  │  ├─Order····················································································目分类水平分析结果文件夹
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.bacteria.txt·················排除部分环境因子后各物种的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.envfit.txt···················排除部分环境因子后各环境因子的RDA坐标、解释方差及p值
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.sample.txt···················排除部分环境因子后各样本的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.pdf···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.png···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.pdf·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.png·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA.bacteria.txt·····························································各物种的RDA坐标
│  │  │  │      Group*_RDA.envfit.txt·······························································各环境因子的RDA坐标、解释方差及p值
│  │  │  │      Group*_RDA.sample.txt·······························································各样本的RDA坐标
│  │  │  │      Group*_RDA_bacteria_location_plot.pdf···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_bacteria_location_plot.png···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.pdf·················································RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.png·················································RDA分析样本和环境因子关系可视化图
│  │  │  │
│  │  │  ├─Phylum···················································································门分类水平分析结果文件夹
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.bacteria.txt·················排除部分环境因子后各物种的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.envfit.txt···················排除部分环境因子后各环境因子的RDA坐标、解释方差及p值
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA.sample.txt···················排除部分环境因子后各样本的RDA坐标
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.pdf···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_bacteria_location_plot.png···排除部分环境因子后RDA分析物种和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.pdf·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Group*_RDA_sample_location_plot.png·····排除部分环境因子后RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA.bacteria.txt·····························································各物种的RDA坐标
│  │  │  │      Group*_RDA.envfit.txt·······························································各环境因子的RDA坐标、解释方差及p值
│  │  │  │      Group*_RDA.sample.txt·······························································各样本的RDA坐标
│  │  │  │      Group*_RDA_bacteria_location_plot.pdf···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_bacteria_location_plot.png···············································RDA分析物种和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.pdf·················································RDA分析样本和环境因子关系可视化图
│  │  │  │      Group*_RDA_sample_location_plot.png·················································RDA分析样本和环境因子关系可视化图
│  │  │  │
│  │  │  └─Species··················································································种分类水平分析结果文件夹
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.bacteria.txt················排除部分环境因子后各物种的CCA坐标
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.envfit.txt··················排除部分环境因子后各环境因子的CCA坐标、解释方差及p值
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA.sample.txt··················排除部分环境因子后各样本的CCA坐标
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.pdf··排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_bacteria_location_plot.png··排除部分环境因子后CCA分析物种和环境因子关系可视化图
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.pdf····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Group*_CCA_sample_location_plot.png····排除部分环境因子后CCA分析样本和环境因子关系可视化图
│  │  │          Group*_CCA.bacteria.txt····························································各物种的CCA坐标
│  │  │          Group*_CCA.envfit.txt······························································各环境因子的CCA坐标、解释方差及p值
│  │  │          Group*_CCA.sample.txt······························································各样本的CCA坐标
│  │  │          Group*_CCA_bacteria_location_plot.pdf··············································CCA分析物种和环境因子关系可视化图
│  │  │          Group*_CCA_bacteria_location_plot.png··············································CCA分析物种和环境因子关系可视化图
│  │  │          Group*_CCA_sample_location_plot.pdf················································CCA分析样本和环境因子关系可视化图
│  │  │          Group*_CCA_sample_location_plot.png················································CCA分析样本和环境因子关系可视化图
│  │  │
│  │  ├─2-CorrelationHeatmap········································································环境因子和各分类水平物种的相关性热图文件夹
│  │  │  ├─Class····················································································纲分类水平分析结果文件夹
│  │  │  │      Correlation_heatmap.pdf·····························································环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf·················排除部分环境因子后环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt·········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt····排除部分环境因子后Spearman 秩相关矩阵
│  │  │  │      fdr_adjusted_p_value_matrix.txt·····················································校正错误发现率的相关系数p值矩阵
│  │  │  │      spearman_rank_correlation_matrix.txt················································Spearman 秩相关矩阵
│  │  │  │
│  │  │  ├─Family···················································································科分类水平分析结果文件夹
│  │  │  │      Correlation_heatmap.pdf·····························································环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf·················排除部分环境因子后环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt·········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt····排除部分环境因子后Spearman 秩相关矩阵
│  │  │  │      fdr_adjusted_p_value_matrix.txt·····················································校正错误发现率的相关系数p值矩阵
│  │  │  │      spearman_rank_correlation_matrix.txt················································Spearman 秩相关矩阵
│  │  │  │
│  │  │  ├─Genus····················································································属分类水平分析结果文件夹
│  │  │  │      Correlation_heatmap.pdf·····························································环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf·················排除部分环境因子后环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt·········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt····排除部分环境因子后Spearman 秩相关矩阵
│  │  │  │      fdr_adjusted_p_value_matrix.txt·····················································校正错误发现率的相关系数p值矩阵
│  │  │  │      spearman_rank_correlation_matrix.txt················································Spearman 秩相关矩阵
│  │  │  │
│  │  │  ├─Order····················································································目分类水平分析结果文件夹
│  │  │  │      Correlation_heatmap.pdf·····························································环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf·················排除部分环境因子后环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt·········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt····排除部分环境因子后Spearman 秩相关矩阵
│  │  │  │      fdr_adjusted_p_value_matrix.txt·····················································校正错误发现率的相关系数p值矩阵
│  │  │  │      spearman_rank_correlation_matrix.txt················································Spearman 秩相关矩阵
│  │  │  │
│  │  │  ├─Phylum···················································································门分类水平分析结果文件夹
│  │  │  │      Correlation_heatmap.pdf·····························································环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf·················排除部分环境因子后环境因子和物种的相关性热图
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt·········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │  │      DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt····排除部分环境因子后Spearman 秩相关矩阵
│  │  │  │      fdr_adjusted_p_value_matrix.txt·····················································校正错误发现率的相关系数p值矩阵
│  │  │  │      spearman_rank_correlation_matrix.txt················································Spearman 秩相关矩阵
│  │  │  └─Species··················································································种分类水平分析结果文件夹
│  │  │          Correlation_heatmap.pdf····························································环境因子和物种的相关性热图
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_Correlation_heatmap.pdf················排除部分环境因子后环境因子和物种的相关性热图
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_fdr_adjusted_p_value_matrix.txt········排除部分环境因子后校正错误发现率的相关系数p值矩阵
│  │  │          DaysSinceExperimentStart_Month_Day_excluded_spearman_rank_correlation_matrix.txt···排除部分环境因子后Spearman 秩相关矩阵
│  │  │          fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │  │          spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │  │
│  │  └─3-NetworkAnalysis···········································································各分类水平丰度较高物种的相关网络分析
│  │      ├─Class···················································································纲分类水平分析结果文件夹
│  │      │      Correlation_network.pdf····························································相关网络图
│  │      │      fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │      │      spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │      │
│  │      ├─Family··················································································科分类水平分析结果文件夹
│  │      │      Correlation_network.pdf····························································相关网络图
│  │      │      fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │      │      spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │      │
│  │      ├─Genus···················································································属分类水平分析结果文件夹
│  │      │      Correlation_network.pdf····························································相关网络图
│  │      │      fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │      │      spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │      │
│  │      ├─Order···················································································目分类水平分析结果文件夹
│  │      │      Correlation_network.pdf····························································相关网络图
│  │      │      fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │      │      spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │      │
│  │      ├─Phylum··················································································门分类水平分析结果文件夹
│  │      │      Correlation_network.pdf····························································相关网络图
│  │      │      fdr_adjusted_p_value_matrix.txt····················································校正错误发现率的相关系数p值矩阵
│  │      │      spearman_rank_correlation_matrix.txt···············································Spearman 秩相关矩阵
│  │      │
│  │      └─Species·················································································种分类水平分析结果文件夹
│  │              Correlation_network.pdf···························································相关网络图
│  │              fdr_adjusted_p_value_matrix.txt···················································校正错误发现率的相关系数p值矩阵
│  │              spearman_rank_correlation_matrix.txt··············································Spearman 秩相关矩阵
│  │
│  ├─7-FunctionAnalysis·············································································功能分析结果文件夹
│  │  ├─1-KEGG_Pathway··············································································代谢通路丰度文件夹
│  │  │      feature-table.metagenome.L1.txt························································L1水平代谢通路丰度表
│  │  │      feature-table.metagenome.L2.txt························································L2水平代谢通路丰度表
│  │  │      feature-table.metagenome.L3.txt························································L3水平代谢通路丰度表
│  │  │      percent.feature-table.metagenome.L1.png················································L1水平相对丰度堆积柱形图
│  │  │      percent.feature-table.metagenome.L2.png················································L2水平相对丰度堆积柱形图
│  │  │      percent.feature-table.metagenome.L3.png················································L3水平相对丰度堆积柱形图
│  │  │
│  │  ├─2-PCAPlots··················································································代谢通路的PCA分析
│  │  │      feature-table.metagenome.L1.Group*.PCA.pdf·············································L1水平代谢通路的PCA图
│  │  │      feature-table.metagenome.L2.Group*.PCA.pdf·············································L2水平代谢通路的PCA图
│  │  │      feature-table.metagenome.L3.Group*.PCA.pdf·············································L3水平代谢通路的PCA图
│  │  │
│  │  └─3-SignifcanceAnalysis·······································································代谢通路显著差异分组比较
│  │      │      feature-table.metagenome.KEGG_Pathways.STAMP.txt···································代谢通路STAMP分析数据文件
│  │      │      feature-table.metagenome.L1_Group*_DunnTest.txt····································L1水平代谢通路相对丰度显著差异分组比较
│  │      │      feature-table.metagenome.L2_Group*_DunnTest.txt····································L2水平代谢通路相对丰度显著差异分组比较
│  │      │      feature-table.metagenome.L3_Group*_DunnTest.txt····································L3水平代谢通路相对丰度显著差异分组比较
│  │      │
│  │      └─2-ANOVA_And_Duncan······································································ANOVA接着Duncan分析的结果文件夹
│  │              Group*_all_pathway_anova_results.xls··············································所有通路ANOVA分析结果文件夹
│  │              Group*_all_significant_pathway_barplot_of_duncan.pdf······························所有显著通路的柱形图展示
│  │              Group*_all_significant_pathway_duncan_results.xls·································所有通路的Duncan分析结果
│  │              Group*_Cellular Processes_barplot_of_duncan.pdf···································按L1水平分类分别画的柱形图
│  │              Group*_Cellular Processes_duncan_results.xls······································按L1水平分类分别Duncan检验结果
│  │              Group*_Environmental Information Processing_barplot_of_duncan.pdf·················按L1水平分类分别画的柱形图
│  │              Group*_Environmental Information Processing_duncan_results.xls····················按L1水平分类分别Duncan检验结果
│  │              Group*_Genetic Information Processing_barplot_of_duncan.pdf·······················按L1水平分类分别画的柱形图
│  │              Group*_Genetic Information Processing_duncan_results.xls··························按L1水平分类分别Duncan检验结果
│  │              Group*_Human Diseases_barplot_of_duncan.pdf·······································按L1水平分类分别画的柱形图
│  │              Group*_Human Diseases_duncan_results.xls··········································按L1水平分类分别Duncan检验结果
│  │              Group*_Metabolism_barplot_of_duncan.pdf···········································按L1水平分类分别画的柱形图
│  │              Group*_Metabolism_duncan_results.xls··············································按L1水平分类分别Duncan检验结果
│  │              Group*_Organismal Systems_barplot_of_duncan.pdf···································按L1水平分类分别画的柱形图
│  │              Group*_Organismal Systems_duncan_results.xls······································按L1水平分类分别Duncan检验结果
│  │              Group*_Unclassified_barplot_of_duncan.pdf·········································按L1水平分类分别画的柱形图
│  │              Group*_Unclassified_duncan_results.xls············································按L1水平分类分别Duncan检验结果
└─└─8-FiguresTablesForReport·······································································结题报告中的图和表汇总文件夹