{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":259109961,"defaultBranch":"main","name":"pyrodigal","ownerLogin":"althonos","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-04-26T18:59:13.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8660647?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1716475091.0","currentOid":""},"activityList":{"items":[{"before":"a9ccb8484722189131036cc7e7e08a33ec2b1f25","after":"00a33b818f21a5fbc6b3988fe182bfe042e3c9b3","ref":"refs/heads/main","pushedAt":"2024-05-23T14:38:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v3.4.1","shortMessageHtmlLink":"Release v3.4.1"}},{"before":"43be8a48a87ff2425955c8dfa98a0a0e5adab2b4","after":"a9ccb8484722189131036cc7e7e08a33ec2b1f25","ref":"refs/heads/main","pushedAt":"2024-05-23T12:35:20.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix various compilation warnings in `pyrodigal.lib`","shortMessageHtmlLink":"Fix various compilation warnings in <code>pyrodigal.lib</code>"}},{"before":"74cbbc00414d708513ef002513c85a93d5eb1349","after":"43be8a48a87ff2425955c8dfa98a0a0e5adab2b4","ref":"refs/heads/main","pushedAt":"2024-05-23T12:25:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Translate Prodigal initialization functions into sparse code to reduce library size","shortMessageHtmlLink":"Translate Prodigal initialization functions into sparse code to reduc…"}},{"before":"4d4ebe26c435defe758d27b56954335b560098ef","after":"74cbbc00414d708513ef002513c85a93d5eb1349","ref":"refs/heads/main","pushedAt":"2024-05-22T12:58:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Refactor SIMD code to reduce number of required registers","shortMessageHtmlLink":"Refactor SIMD code to reduce number of required registers"}},{"before":"dab7bf94b1977d8ede2132cb8d9ec04124a22fe5","after":"4d4ebe26c435defe758d27b56954335b560098ef","ref":"refs/heads/main","pushedAt":"2024-05-19T09:12:48.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v3.4.0","shortMessageHtmlLink":"Release v3.4.0"}},{"before":"71558d1e332a0f6d6b2f6fb4b1495a4e3b08631b","after":"dab7bf94b1977d8ede2132cb8d9ec04124a22fe5","ref":"refs/heads/main","pushedAt":"2024-05-19T08:57:49.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v3.4.0","shortMessageHtmlLink":"Release v3.4.0"}},{"before":"33b316fb2f66ad42b2b368cd88817e46de76f5e5","after":"71558d1e332a0f6d6b2f6fb4b1495a4e3b08631b","ref":"refs/heads/main","pushedAt":"2024-05-18T23:22:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v3.4.0","shortMessageHtmlLink":"Release v3.4.0"}},{"before":"039df51001c422edb62d406f2184acc986c78835","after":"33b316fb2f66ad42b2b368cd88817e46de76f5e5","ref":"refs/heads/main","pushedAt":"2024-05-18T22:51:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add PyPy 3.10 test and wheels to GitHub Actions","shortMessageHtmlLink":"Add PyPy 3.10 test and wheels to GitHub Actions"}},{"before":"af58630e24fbc07b569bd01e190881a05e9d91f7","after":"039df51001c422edb62d406f2184acc986c78835","ref":"refs/heads/main","pushedAt":"2024-05-18T22:46:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add `full_id` parameter to some write methods of `Genes`","shortMessageHtmlLink":"Add <code>full_id</code> parameter to some write methods of <code>Genes</code>"}},{"before":"d354cd06bc3cdb4a2b48ef9c1d84f877925a60e3","after":"af58630e24fbc07b569bd01e190881a05e9d91f7","ref":"refs/heads/main","pushedAt":"2024-05-18T13:50:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use MacOS 11 to test package in GitHub Actions","shortMessageHtmlLink":"Use MacOS 11 to test package in GitHub Actions"}},{"before":"15624713d1295a44b494538f2f52d2bf566bf8f7","after":"d354cd06bc3cdb4a2b48ef9c1d84f877925a60e3","ref":"refs/heads/main","pushedAt":"2024-05-18T13:48:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix compilation on Clang and MSVC","shortMessageHtmlLink":"Fix compilation on Clang and MSVC"}},{"before":"9887bb29ff39428b205ed63205e755f5209b16e8","after":"15624713d1295a44b494538f2f52d2bf566bf8f7","ref":"refs/heads/main","pushedAt":"2024-05-18T13:44:32.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix issue with masking of trailing nucleotides (#55)","shortMessageHtmlLink":"Fix issue with masking of trailing nucleotides (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2302264477\" data-permission-text=\"Title is private\" data-url=\"https://github.com/althonos/pyrodigal/issues/55\" data-hovercard-type=\"issue\" data-hovercard-url=\"/althonos/pyrodigal/issues/55/hovercard\" href=\"https://github.com/althonos/pyrodigal/issues/55\">#55</a>)"}},{"before":"564a8e256d73a2bd127bd18d53ec30cb642e8a02","after":"9887bb29ff39428b205ed63205e755f5209b16e8","ref":"refs/heads/main","pushedAt":"2024-05-08T11:19:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use SPDX license qualifier in `PKGBUILD.in` and `setup.cfg` [ci skip]","shortMessageHtmlLink":"Use SPDX license qualifier in <code>PKGBUILD.in</code> and <code>setup.cfg</code> [ci skip]"}},{"before":"11cf811f169a5b8030a96c9e48e5f5b32e75498f","after":"564a8e256d73a2bd127bd18d53ec30cb642e8a02","ref":"refs/heads/main","pushedAt":"2024-04-18T11:19:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Make sure `jquery` is available in documentation [ci skip]","shortMessageHtmlLink":"Make sure <code>jquery</code> is available in documentation [ci skip]"}},{"before":"c10820089875d84b8d42aebd1c4194853221504b","after":"11cf811f169a5b8030a96c9e48e5f5b32e75498f","ref":"refs/heads/main","pushedAt":"2024-03-04T14:00:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add badge with citations to `README.md` [ci skip]","shortMessageHtmlLink":"Add badge with citations to <code>README.md</code> [ci skip]"}},{"before":"335778afd4f39fd7ef2ee7217a8fb793a14b7a59","after":"c10820089875d84b8d42aebd1c4194853221504b","ref":"refs/heads/main","pushedAt":"2024-03-02T23:24:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix formatting of `CHANGELOG.md` [ci skip]","shortMessageHtmlLink":"Fix formatting of <code>CHANGELOG.md</code> [ci skip]"}},{"before":"da8ed163f7b5e71c3d53377cdf48d5a433c96551","after":"335778afd4f39fd7ef2ee7217a8fb793a14b7a59","ref":"refs/heads/main","pushedAt":"2024-02-27T09:43:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add Dnaapler paper to the documentation [ci skip]","shortMessageHtmlLink":"Add Dnaapler paper to the documentation [ci skip]"}},{"before":"98a4b605397aab0b3451463de6749df6b7241781","after":"da8ed163f7b5e71c3d53377cdf48d5a433c96551","ref":"refs/heads/main","pushedAt":"2024-02-27T09:39:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Remove paths from Bibtex file in docs [ci skip]","shortMessageHtmlLink":"Remove paths from Bibtex file in docs [ci skip]"}},{"before":"1f28850bf3180f840f70382d35aaba0fdeef9d9f","after":null,"ref":"refs/tags/v3.3.1-alpha1","pushedAt":"2024-02-21T00:26:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"}},{"before":"01a95a25962a7e00986fd84a905e67d7eaa1fd74","after":"98a4b605397aab0b3451463de6749df6b7241781","ref":"refs/heads/main","pushedAt":"2024-02-21T00:26:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update `setup.py` to support compiling with profile-guided optimizations","shortMessageHtmlLink":"Update <code>setup.py</code> to support compiling with profile-guided optimizations"}},{"before":"d6bcb2a47439d668ab964804b86deb0aa04867ba","after":"01a95a25962a7e00986fd84a905e67d7eaa1fd74","ref":"refs/heads/main","pushedAt":"2024-02-20T22:12:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix `setup.py` for Python 3.6","shortMessageHtmlLink":"Fix <code>setup.py</code> for Python 3.6"}},{"before":"99757018b3c2f6131bb2130defcb9f28cbe34007","after":"d6bcb2a47439d668ab964804b86deb0aa04867ba","ref":"refs/heads/main","pushedAt":"2024-02-20T22:08:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix generation of PGO profiles in `test.yml` Actions workflow","shortMessageHtmlLink":"Fix generation of PGO profiles in <code>test.yml</code> Actions workflow"}},{"before":"98a4b605397aab0b3451463de6749df6b7241781","after":"99757018b3c2f6131bb2130defcb9f28cbe34007","ref":"refs/heads/main","pushedAt":"2024-02-20T21:52:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Customize `setup.py` to build extension with profile-guided optimization","shortMessageHtmlLink":"Customize <code>setup.py</code> to build extension with profile-guided optimization"}},{"before":"fccb6dc688fdf9ac2207e4c51003af4002a2cbfc","after":"98a4b605397aab0b3451463de6749df6b7241781","ref":"refs/heads/main","pushedAt":"2024-02-20T20:47:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update `setup.py` to support compiling with profile-guided optimizations","shortMessageHtmlLink":"Update <code>setup.py</code> to support compiling with profile-guided optimizations"}},{"before":"0fa2f32c038b55cfb9f1280c88703dfe78c9abc4","after":"fccb6dc688fdf9ac2207e4c51003af4002a2cbfc","ref":"refs/heads/main","pushedAt":"2024-02-20T13:48:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add BioArchLinux install to the docs [ci skip]","shortMessageHtmlLink":"Add BioArchLinux install to the docs [ci skip]"}},{"before":"d3b8c2a9c0d28b48dabcd74c5548d9d5d7de1d30","after":"0fa2f32c038b55cfb9f1280c88703dfe78c9abc4","ref":"refs/heads/main","pushedAt":"2024-01-24T19:43:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v3.3.0","shortMessageHtmlLink":"Release v3.3.0"}},{"before":"bfdeaa21388708c03aa3a7daca76c15740e6faae","after":"d3b8c2a9c0d28b48dabcd74c5548d9d5d7de1d30","ref":"refs/heads/main","pushedAt":"2024-01-24T17:21:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix bad pointer handling in `Nodes.__setstate__` causing memory leaks","shortMessageHtmlLink":"Fix bad pointer handling in <code>Nodes.__setstate__</code> causing memory leaks"}},{"before":"54ff3e895d39702da59b34edbc3fa8deb2f8819d","after":"bfdeaa21388708c03aa3a7daca76c15740e6faae","ref":"refs/heads/main","pushedAt":"2024-01-24T15:14:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add benchmarks for `v3.3.0` [ci skip]","shortMessageHtmlLink":"Add benchmarks for <code>v3.3.0</code> [ci skip]"}},{"before":"6c8919a9657b32e57bf05d55c6bc78191ca3cdbe","after":"54ff3e895d39702da59b34edbc3fa8deb2f8819d","ref":"refs/heads/main","pushedAt":"2024-01-24T14:10:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add single run benchmarks for `v3.4.0`","shortMessageHtmlLink":"Add single run benchmarks for <code>v3.4.0</code>"}},{"before":"21bd1441efb438134a6ada9eea0cbdec75cf6802","after":"6c8919a9657b32e57bf05d55c6bc78191ca3cdbe","ref":"refs/heads/main","pushedAt":"2024-01-23T19:38:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add CLI option to disable translation of stop codons (#51)","shortMessageHtmlLink":"Add CLI option to disable translation of stop codons (<a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2095943400\" data-permission-text=\"Title is private\" data-url=\"https://github.com/althonos/pyrodigal/issues/51\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/althonos/pyrodigal/pull/51/hovercard\" href=\"https://github.com/althonos/pyrodigal/pull/51\">#51</a>)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUiEFGwA","startCursor":null,"endCursor":null}},"title":"Activity · althonos/pyrodigal"}