{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":308752997,"defaultBranch":"master","name":"pyhmmer","ownerLogin":"althonos","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-10-30T22:01:18.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8660647?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1714063632.0","currentOid":""},"activityList":{"items":[{"before":"8b41a59a7d451dbaf23124b3992477a2d7d244a7","after":"9839c8c40e98974fc90e6efc62f633c3c12aadf3","ref":"refs/heads/master","pushedAt":"2024-06-06T13:28:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Avoid calling `fclose` with `NULL` file in `Sequence.write` and `MSA.write`","shortMessageHtmlLink":"Avoid calling fclose with NULL file in Sequence.write and `MSA.…"}},{"before":"735ec14ae7f6bd4759eb196e010ff505fa75609b","after":"8b41a59a7d451dbaf23124b3992477a2d7d244a7","ref":"refs/heads/master","pushedAt":"2024-06-06T13:09:43.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Make `HMMFile` and `HMMPressedFile` raise `AlphabetMismatch` on files with mixed alphabets","shortMessageHtmlLink":"Make HMMFile and HMMPressedFile raise AlphabetMismatch on files…"}},{"before":"b5be2e4154baff56d3973385c72f4422c915ba32","after":"735ec14ae7f6bd4759eb196e010ff505fa75609b","ref":"refs/heads/master","pushedAt":"2024-04-25T16:47:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.12","shortMessageHtmlLink":"Release v0.10.12"}},{"before":"7b1ffb8322982a6b7af4792fb132ccd0d8d70c57","after":"b5be2e4154baff56d3973385c72f4422c915ba32","ref":"refs/heads/master","pushedAt":"2024-04-25T11:15:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Update `test.yml` Actions workflow to use `macos-12` runner image","shortMessageHtmlLink":"Update test.yml Actions workflow to use macos-12 runner image"}},{"before":"c5234e58fe0e0d6065073467fc728299eab448a4","after":"7b1ffb8322982a6b7af4792fb132ccd0d8d70c57","ref":"refs/heads/master","pushedAt":"2024-04-25T11:00:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix bug with model composition and cutoffs in `HMM.__setstate__` (#67)","shortMessageHtmlLink":"Fix bug with model composition and cutoffs in HMM.__setstate__ (#67)"}},{"before":"8cf9a2eb359513de74d0afaa73971e826c843f9a","after":"c5234e58fe0e0d6065073467fc728299eab448a4","ref":"refs/heads/master","pushedAt":"2024-04-20T10:16:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Replace `t2pks.hmm` with `RREFam` in documentation [ci skip]","shortMessageHtmlLink":"Replace t2pks.hmm with RREFam in documentation [ci skip]"}},{"before":"018a65062a8ffddae36d409bddf91cc416d0e824","after":"8cf9a2eb359513de74d0afaa73971e826c843f9a","ref":"refs/heads/master","pushedAt":"2024-03-28T18:47:30.000Z","pushType":"push","commitsCount":11,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Delete unused HMMER2-formatted HMMs in tests data","shortMessageHtmlLink":"Delete unused HMMER2-formatted HMMs in tests data"}},{"before":"a290b1c9f1f7e904917316bec3954e660bbdac27","after":"018a65062a8ffddae36d409bddf91cc416d0e824","ref":"refs/heads/master","pushedAt":"2024-03-27T20:19:05.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.11","shortMessageHtmlLink":"Release v0.10.11"}},{"before":"0e0322983c130b6b722100b997ed8b4b7852f305","after":"a290b1c9f1f7e904917316bec3954e660bbdac27","ref":"refs/heads/master","pushedAt":"2024-03-27T19:56:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.11","shortMessageHtmlLink":"Release v0.10.11"}},{"before":"03b662553e9463678817596386c7dafe55f162b2","after":"0e0322983c130b6b722100b997ed8b4b7852f305","ref":"refs/heads/master","pushedAt":"2024-03-27T18:23:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix HMMER being built without SSE4.1 support after b3d71d8","shortMessageHtmlLink":"Fix HMMER being built without SSE4.1 support after b3d71d8"}},{"before":"8d28bca9f5c579b055a74328edf26805970796e0","after":"03b662553e9463678817596386c7dafe55f162b2","ref":"refs/heads/master","pushedAt":"2024-03-18T10:46:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.10","shortMessageHtmlLink":"Release v0.10.10"}},{"before":"295176ca69d7096f76b1d9253645bd587a9170e6","after":"8d28bca9f5c579b055a74328edf26805970796e0","ref":"refs/heads/master","pushedAt":"2024-03-18T10:24:38.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix handling of NULL buffers in `fopencookie` functions","shortMessageHtmlLink":"Fix handling of NULL buffers in fopencookie functions"}},{"before":"31671a7d86ac8cc28b7088074115ef657345be60","after":"295176ca69d7096f76b1d9253645bd587a9170e6","ref":"refs/heads/master","pushedAt":"2024-03-17T23:26:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Use `off_t` instead of `off64_t` for `fopencookie` implementation","shortMessageHtmlLink":"Use off_t instead of off64_t for fopencookie implementation"}},{"before":"c1086b48aeca6af89a9705788d2f99f0db0dd234","after":"31671a7d86ac8cc28b7088074115ef657345be60","ref":"refs/heads/master","pushedAt":"2024-03-13T14:06:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix typo in documentation [ci skip]","shortMessageHtmlLink":"Fix typo in documentation [ci skip]"}},{"before":"343e71db9a61b244e94e31c82d1d8223484a1ac6","after":"c1086b48aeca6af89a9705788d2f99f0db0dd234","ref":"refs/heads/master","pushedAt":"2024-03-13T14:04:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix typo in documentation [ci skip]","shortMessageHtmlLink":"Fix typo in documentation [ci skip]"}},{"before":"d61316c5477347c6bbf10213f61ff079d4d173d0","after":"343e71db9a61b244e94e31c82d1d8223484a1ac6","ref":"refs/heads/master","pushedAt":"2024-03-12T16:05:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.9","shortMessageHtmlLink":"Release v0.10.9"}},{"before":"824962da6afb397904ef7460ac67ec95a7324537","after":"d61316c5477347c6bbf10213f61ff079d4d173d0","ref":"refs/heads/master","pushedAt":"2024-03-12T15:43:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix array reallocation formula causing segfaults in `nhmmer` (#62)","shortMessageHtmlLink":"Fix array reallocation formula causing segfaults in nhmmer (#62)"}},{"before":"9862cc7306421a27f7283b0846a2113f7cf2fa66","after":"824962da6afb397904ef7460ac67ec95a7324537","ref":"refs/heads/master","pushedAt":"2024-03-05T23:20:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.8","shortMessageHtmlLink":"Release v0.10.8"}},{"before":"330e536afd8cd023bb20804ee51e7a1db638aa6a","after":"9862cc7306421a27f7283b0846a2113f7cf2fa66","ref":"refs/heads/master","pushedAt":"2024-03-05T22:45:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add getter to access the strand of a `nhmmer` domain","shortMessageHtmlLink":"Add getter to access the strand of a nhmmer domain"}},{"before":"53d5d353078be27c27318fb378df4bd609f9107a","after":"330e536afd8cd023bb20804ee51e7a1db638aa6a","ref":"refs/heads/master","pushedAt":"2024-03-05T21:24:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Make sure `IsADirectory` is raised when passed path to folders in file classes","shortMessageHtmlLink":"Make sure IsADirectory is raised when passed path to folders in fil…"}},{"before":"ebd15e5c96aeb9a0d45534a50cc01c3f285d81bf","after":"53d5d353078be27c27318fb378df4bd609f9107a","ref":"refs/heads/master","pushedAt":"2024-03-05T18:38:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Remove `aarch64` tests from CI until GitHub supports native runners","shortMessageHtmlLink":"Remove aarch64 tests from CI until GitHub supports native runners"}},{"before":"152520217757567e9568852d7e99d189033c14c4","after":"ebd15e5c96aeb9a0d45534a50cc01c3f285d81bf","ref":"refs/heads/master","pushedAt":"2024-03-05T15:52:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add missing `RF00001` HMM for tests","shortMessageHtmlLink":"Add missing RF00001 HMM for tests"}},{"before":"43aa46cf1c12269a703fc26417947606e3859d50","after":"152520217757567e9568852d7e99d189033c14c4","ref":"refs/heads/master","pushedAt":"2024-03-05T15:46:21.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Check for E-values consistency in `nhmmer` across different window lengths","shortMessageHtmlLink":"Check for E-values consistency in nhmmer across different window le…"}},{"before":"564b679bf3928cecc53ef3de627d3ddb4f74159c","after":"43aa46cf1c12269a703fc26417947606e3859d50","ref":"refs/heads/master","pushedAt":"2024-03-04T14:09:45.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Release v0.10.7","shortMessageHtmlLink":"Release v0.10.7"}},{"before":"53ac8473fea8122d0a5e2337db72dd901eb585ed","after":"564b679bf3928cecc53ef3de627d3ddb4f74159c","ref":"refs/heads/master","pushedAt":"2024-03-04T13:53:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add badge with citations to `README.md` [ci skip]","shortMessageHtmlLink":"Add badge with citations to README.md [ci skip]"}},{"before":"1e337540b7aed6dbefd357548e9c837dc9611581","after":"53ac8473fea8122d0a5e2337db72dd901eb585ed","ref":"refs/heads/master","pushedAt":"2024-03-04T13:48:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Add new publications to documentation [ci skip]","shortMessageHtmlLink":"Add new publications to documentation [ci skip]"}},{"before":"e94be4e3925082ce0048b68f38c0e0683c1c6acb","after":"1e337540b7aed6dbefd357548e9c837dc9611581","ref":"refs/heads/master","pushedAt":"2024-03-04T12:41:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Remove debug `print` from `pyhmmer.hmmer`","shortMessageHtmlLink":"Remove debug print from pyhmmer.hmmer"}},{"before":"11b38e5b90b8339221e7be2946f3281ded017a29","after":"e94be4e3925082ce0048b68f38c0e0683c1c6acb","ref":"refs/heads/master","pushedAt":"2024-03-04T12:40:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix `hmmer` dispatcher possibly entering deadlock on worker thread exceptions","shortMessageHtmlLink":"Fix hmmer dispatcher possibly entering deadlock on worker thread ex…"}},{"before":"1bdfb56f3482481dff2d82d19045119f6f6cf320","after":"11b38e5b90b8339221e7be2946f3281ded017a29","ref":"refs/heads/master","pushedAt":"2024-02-21T14:51:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Fix pointer cast in `__getbuffer__` of `Matrix` and `Vector`","shortMessageHtmlLink":"Fix pointer cast in __getbuffer__ of Matrix and Vector"}},{"before":"bbc67c671cac25d17260835897b60974241b675d","after":"1bdfb56f3482481dff2d82d19045119f6f6cf320","ref":"refs/heads/master","pushedAt":"2024-02-21T13:36:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"althonos","name":"Martin Larralde","path":"/althonos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/8660647?s=80&v=4"},"commit":{"message":"Avoid deploying post-releases to AUR [ci skip]","shortMessageHtmlLink":"Avoid deploying post-releases to AUR [ci skip]"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXjo2QAA","startCursor":null,"endCursor":null}},"title":"Activity · althonos/pyhmmer"}