{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":371677281,"defaultBranch":"main","name":"cellrank","ownerLogin":"WeilerP","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2021-05-28T11:23:25.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/28675704?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1710503827.0","currentOid":""},"activityList":{"items":[{"before":"9069571a1806ba9336202ba8e580a12fbc6b6d1f","after":"6074913214f087301dd49bd9ef581c20ec56e759","ref":"refs/heads/main","pushedAt":"2024-05-15T07:05:31.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Fix failing test","shortMessageHtmlLink":"Fix failing test"}},{"before":"4ae88b9a92bedfb2804c2a25063192ba3901d102","after":"9069571a1806ba9336202ba8e580a12fbc6b6d1f","ref":"refs/heads/main","pushedAt":"2024-03-15T13:40:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update state plotting (#1177)\n\n* Update `TermStatesEstimator::_plot_discrete`\r\n\r\nAdd outline if plotted in the same plot.\r\n\r\n* Update ground truth figures\r\n\r\nUpdate ground truth figures for unit tests using\r\nnew API.","shortMessageHtmlLink":"Update state plotting (theislab#1177)"}},{"before":"b4c2dc7bc81e3d957343db8e27e814f6d75a04ee","after":null,"ref":"refs/heads/feat/update_state_plotting","pushedAt":"2024-03-15T11:57:07.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"a84eeca15c8fe4c1f0a0c542498c2d8540d9d78b","after":"b4c2dc7bc81e3d957343db8e27e814f6d75a04ee","ref":"refs/heads/feat/update_state_plotting","pushedAt":"2024-03-15T08:52:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `_plot_discrete`\n\nRefactor adding `\"nan\"` as a category.","shortMessageHtmlLink":"Update _plot_discrete"}},{"before":null,"after":"a84eeca15c8fe4c1f0a0c542498c2d8540d9d78b","ref":"refs/heads/feat/update_state_plotting","pushedAt":"2024-03-14T09:24:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update ground truth figures\n\nUpdate ground truth figures for unit tests using\nnew API.","shortMessageHtmlLink":"Update ground truth figures"}},{"before":"3b8e3144ae14610b099dc71f047102b8e37b787e","after":"4ae88b9a92bedfb2804c2a25063192ba3901d102","ref":"refs/heads/main","pushedAt":"2024-03-14T09:23:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update pyGAM link function (#1175)\n\nRename `\"inverse-squared\"` to `\"inv_squared\"`.","shortMessageHtmlLink":"Update pyGAM link function (theislab#1175)"}},{"before":"f0e09d27e4c630f2b8d076ade936c215f1276dc3","after":"3b8e3144ae14610b099dc71f047102b8e37b787e","ref":"refs/heads/main","pushedAt":"2024-03-04T18:27:15.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Refactor TSI computation (#1174)\n\n* Copy the estimator to prevent overwriting\r\nattributes","shortMessageHtmlLink":"Refactor TSI computation (theislab#1174)"}},{"before":"cf619299d5002b359191b031000f6cd5301f3c4c","after":null,"ref":"refs/heads/feat/cbc","pushedAt":"2024-03-04T10:07:33.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"cf9bb6592811fd72c4315851259e395aaaec9a02","after":"cf619299d5002b359191b031000f6cd5301f3c4c","ref":"refs/heads/feat/cbc","pushedAt":"2024-03-04T09:51:48.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Add `TestKernel::test_cbc`","shortMessageHtmlLink":"Add TestKernel::test_cbc"}},{"before":"f5a95662f77a0c3aa18055db913d86516b5d4bc4","after":"f0e09d27e4c630f2b8d076ade936c215f1276dc3","ref":"refs/heads/main","pushedAt":"2024-03-04T09:51:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Pin `pytest` upper version (#1172)","shortMessageHtmlLink":"Pin pytest upper version (theislab#1172)"}},{"before":"68264c113e799b00dfe18a7278e47ea73bb60aa3","after":null,"ref":"refs/heads/fix/testing_ci","pushedAt":"2024-03-04T09:50:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":null,"after":"68264c113e799b00dfe18a7278e47ea73bb60aa3","ref":"refs/heads/fix/testing_ci","pushedAt":"2024-03-04T09:31:12.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `pyproject`\n\nPin pytest upper version.","shortMessageHtmlLink":"Update pyproject"}},{"before":"71bacc3fcf7cd252bd22bb67e9029e36eb15516c","after":"cf9bb6592811fd72c4315851259e395aaaec9a02","ref":"refs/heads/feat/cbc","pushedAt":"2024-03-04T09:06:49.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Add `TestKernel::test_cbc`","shortMessageHtmlLink":"Add TestKernel::test_cbc"}},{"before":"721c59fe3bbbad41450a9b0fd5f34eebe683c08b","after":"f5a95662f77a0c3aa18055db913d86516b5d4bc4","ref":"refs/heads/main","pushedAt":"2024-03-04T08:07:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Add TSI score (#1166)\n\n* Add `GPPCA::tsi`\r\n\r\nAdds function for computing terminal state identification score\r\n\r\n* Add `GPCCA::plot_tsi`\r\n\r\nAdd class method to plot terminal state identification.\r\n\r\n* Add `test_gpcca/TestGPCCA::test_tsi`\r\n\r\n* Add `test_plotting.py::TestGPCCA::test_plot_tsi`\r\n\r\n---------\r\n\r\nCo-authored-by: Michal Klein <46717574+michalk8@users.noreply.github.com>","shortMessageHtmlLink":"Add TSI score (theislab#1166)"}},{"before":"6b67f4ce28debd40dec0a55b1b78271f70675fcb","after":null,"ref":"refs/heads/feat/tsi","pushedAt":"2024-03-04T08:05:02.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"7b1d5b9b9ab810c3a2b4cb5dfadb70abfea87f38","after":"6b67f4ce28debd40dec0a55b1b78271f70675fcb","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-03T19:29:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"michalk8","name":null,"path":"/michalk8","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/46717574?s=80&v=4"},"commit":{"message":"Deep copy GPCCA object","shortMessageHtmlLink":"Deep copy GPCCA object"}},{"before":"2c5ee8f2be1ec050eab83bfb6da349c170430121","after":"71bacc3fcf7cd252bd22bb67e9029e36eb15516c","ref":"refs/heads/feat/cbc","pushedAt":"2024-03-03T09:52:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `_get_empiricial_velocity_field`\n\n* Refactor definition of `empirical_velo`.","shortMessageHtmlLink":"Update _get_empiricial_velocity_field"}},{"before":"67597b249f978159b8550f91d9fa3831804d77c2","after":"7b1d5b9b9ab810c3a2b4cb5dfadb70abfea87f38","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-02T15:00:57.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Add `test_plotting.py::TestGPCCA::test_plot_tsi`","shortMessageHtmlLink":"Add test_plotting.py::TestGPCCA::test_plot_tsi"}},{"before":"2aeeeb0cffae6f38010c0c949edf7d0cc3785770","after":"67597b249f978159b8550f91d9fa3831804d77c2","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-02T14:41:06.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Add `test_plotting.py::TestGPCCA::test_plot_tsi`","shortMessageHtmlLink":"Add test_plotting.py::TestGPCCA::test_plot_tsi"}},{"before":"b66d4c0f5762bf9ffe8ed3a15b8bb158ee7c6b4d","after":"2aeeeb0cffae6f38010c0c949edf7d0cc3785770","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-01T14:06:05.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `plot_tsi`\n\n* Update docstrings.\n* Update `RuntimeError` message\n* Update return statement; only `ax` is removed.","shortMessageHtmlLink":"Update plot_tsi"}},{"before":"eb4d321546631a83ae26a778507bd3c6de030e41","after":"b66d4c0f5762bf9ffe8ed3a15b8bb158ee7c6b4d","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-01T11:07:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `plot_tsi` docstrings.","shortMessageHtmlLink":"Update plot_tsi docstrings."}},{"before":"5f46c8c76272df9c23e9479d1a30afcbe2613a56","after":"eb4d321546631a83ae26a778507bd3c6de030e41","ref":"refs/heads/feat/tsi","pushedAt":"2024-03-01T10:17:29.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `plot_tsi`\n\n* Add argument `n_macrostates`.\n* Remove argument `tsi_df` and use class attribute directly instead.","shortMessageHtmlLink":"Update plot_tsi"}},{"before":"d677cc2f162e3aecb8d54d2f372b7f6a8173c23c","after":"2c5ee8f2be1ec050eab83bfb6da349c170430121","ref":"refs/heads/feat/cbc","pushedAt":"2024-02-29T15:05:29.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `get_cbc`\n\n* Add return type.\n* Rename argument `graph` to `graph_key`.\n* Update docstrings.\n* Rename and refactor `get_pearson_corr`.","shortMessageHtmlLink":"Update get_cbc"}},{"before":"c829bfb2693aac32ed1770f89d3fbf5671324b41","after":"5f46c8c76272df9c23e9479d1a30afcbe2613a56","ref":"refs/heads/feat/tsi","pushedAt":"2024-02-29T11:50:13.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `plot_tsi`\n\n* Update default values of `x_offset` and `y_offset` and update type\nhints.\n* Rename argument `fname` to `save`.\n* Add arguments `figsize` and `dpi`.\n* Update docstrings.\n* Update figure setup.\n* Fix x-axis labels caused by latest changes to `get_tsi`.\n* Use `save_fig` function.\n* Return matplotlib `Figure` and `Axis` instances.","shortMessageHtmlLink":"Update plot_tsi"}},{"before":"7c8b9d4f0664fee3bc6d029f82cc99a410f0fbeb","after":"721c59fe3bbbad41450a9b0fd5f34eebe683c08b","ref":"refs/heads/main","pushedAt":"2024-02-29T08:51:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"},"commit":{"message":"Update `heatmap` (#1160)\n\nAdd argument `title`.","shortMessageHtmlLink":"Update heatmap (theislab#1160)"}},{"before":"65a841b9795a42a054f08ec81c1076c950ec3609","after":null,"ref":"refs/heads/feat/restrict_embedding_projection_to_knn_based_kernels","pushedAt":"2024-02-29T08:51:08.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"410ce67ef0d3b6f1f050957e97492b9fc43c80a5","after":null,"ref":"refs/heads/dev","pushedAt":"2024-02-29T08:51:02.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"14334fb9431fd6f0b6a915df75fce6f0a696a600","after":null,"ref":"refs/heads/feat/realtimekernel_transition_matrix_warning","pushedAt":"2024-02-29T08:50:59.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"e56f2a3f6dab9a32b3820f6058e49561c6115b46","after":null,"ref":"refs/heads/feat/generalize_reprogramming_dataset","pushedAt":"2024-02-29T08:50:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}},{"before":"988de73d14bb34c22e21fd5d8ccb16af08789e81","after":null,"ref":"refs/heads/feat/python3.7_deprecation","pushedAt":"2024-02-29T08:50:46.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"WeilerP","name":"Philipp Weiler","path":"/WeilerP","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/28675704?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAESji7KQA","startCursor":null,"endCursor":null}},"title":"Activity ยท WeilerP/cellrank"}