setup.cfg

[metadata]
name = stingray
author = Stingray Developers
author_email = spectraltiming-stingray@googlegroups.com
license = MIT
license_file = LICENSE.rst
url = https://docs.stingray.science
description = Time Series Methods For Astronomical X-ray Data
long_description = file: README.rst
long_description_content_type = text/x-rst
edit_on_github = False
github_project = StingraySoftware/stingray

[options]
zip_safe = False
packages = find:
python_requires = >=3.8
setup_requires = setuptools_scm
install_requires =
    setuptools
    astropy>=4.0
    numpy>=1.17.0
    scipy>=1.1.0
; Matplotlib 3.4.0 is incompatible with Astropy
    matplotlib>=3.0,!=3.4.0

[options.entry_points]
console_scripts =
    astropy-package-template-example = packagename.example_mod:main

[options.extras_require]
all =
    tbb
    numba
    jplephem
    emcee>=3.0.0
    statsmodels
    corner
    lightkurve
    pyfftw
    h5py
    pint-pulsar
    numcodecs
    pyyaml
    xarray
    pyarrow
    pandas
    ultranest
    jax
    tinygp
    jaxns
    etils
    tensorflow_probability
    typing_extensions
test =
    pytest
    pytest-astropy
docs =
    jinja2==3.1.3
    docutils
    sphinx-astropy
    nbsphinx>=0.8.3,!=0.8.8
    nbconvert<7.14
    pandoc
    ipython
    towncrier<22.12.0

[options.package_data]
stingray.tests = data/*
stingray.pulse.tests = data/*
stingray = datasets/*
* = *.fits, *.evt, *.rmf, *.txt

[tool:pytest]
testpaths = "stingray" "docs"
doctest_plus = enabled
text_file_format = rst
addopts = --doctest-rst
filterwarnings =
    error
    ignore:Unrecognized parfile line:UserWarning
    ignore:.*:ResourceWarning
    ignore:distutils Version classes are deprecated.:DeprecationWarning
    ignore:unclosed .ssl.SSLSocket:ResourceWarning
    ignore:.*set self.value directly:DeprecationWarning
    ignore:On Windows, the size of an integer is 32 bits:UserWarning
    ignore:.*Number of segments used in averaging.*:UserWarning
    ignore:.*:astropy.units.core.UnitsWarning
    ignore:.*cannot be added to FITS Header:astropy.utils.exceptions.AstropyUserWarning
    ignore:Numba not installed:UserWarning
    ignore:More than 20 figures have been opened.:RuntimeWarning
    ignore:This platform does not support:RuntimeWarning
    ignore:Some error bars in the Averaged:UserWarning
    ignore:n_ave is below 30:UserWarning
    ignore:pyfftw not installed:UserWarning
    ignore:SIMON says. Errorbars on cross spectra are not thoroughly tested.:UserWarning
    ignore:SIMON says. Stingray only uses poisson err_dist at the moment.:UserWarning
    ignore:SIMON says. Looks like your lightcurve:UserWarning
    ignore:Matplotlib is currently using agg, which is a:UserWarning
    ignore:Using or importing the ABCs from 'collections':DeprecationWarning
    ignore:unclosed file:ResourceWarning
    ignore:numpy.ufunc size changed:RuntimeWarning
    ignore:numpy.ndarray size changed:RuntimeWarning
    ignore:invalid value encountered:RuntimeWarning
    ignore:divide by zero encountered:RuntimeWarning
    ignore:underflow encountered:RuntimeWarning
    ignore:overflow encountered:RuntimeWarning
    ignore:table path was not set via the path= argument; using default path:UserWarning
    ignore:Large Datasets may not be processed efficiently:UserWarning
    ignore:.*is a deprecated alias for:DeprecationWarning
    ignore:.*HIERARCH card will be created.*:
    ignore:.*FigureCanvasAgg is non-interactive.*:UserWarning
    ignore:.*jax.* deprecated:DeprecationWarning:
    ignore:.*Converting to lower precision.*:UserWarning
    ignore:.*is_categorical_dtype is deprecated.*:DeprecationWarning
    ignore:.*datetime.datetime.utcfromtimestamp.*:DeprecationWarning
    ignore:.*__array_wrap__ must accept context and return_scalar arguments:DeprecationWarning
    ignore:.*Pyarrow:
    ignore:.*Creating an ndarray from ragged nested sequences:

;addopts = --disable-warnings

[coverage:run]
omit =
    stingray/_astropy_init*
    stingray/conftest.py
    stingray/*setup_package*
    stingray/tests/*
    stingray/*/tests/*
    stingray/extern/*
    stingray/version*
    */stingray/_astropy_init*
    */stingray/conftest.py
    */stingray/*setup_package*
    */stingray/tests/*
    */stingray/*/tests/*
    */stingray/extern/*
    */stingray/version*

[coverage:report]
exclude_lines =
    # Have to re-enable the standard pragma
    pragma: no cover
    # Don't complain about packages we have installed
    except ImportError
    # Don't complain if tests don't hit assertions
    raise AssertionError
    raise NotImplementedError
    # Don't complain about script hooks
    def main\(.*\):
    # Ignore branches that don't pertain to this version of Python
    pragma: py{ignore_python_version}
    # Don't complain about IPython completion helper
    def _ipython_key_completions_


[pycodestyle]
max-line-length = 100
exclude = extern,*parsetab.py,*lextab.py,test_*.py,__*.py


[flake8]
max-line-length = 100
exclude = extern,*parsetab.py,*lextab.py,test_*.py,__*.py
extend-ignore = E203, W503, W605