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This repository has been archived by the owner on Nov 8, 2021. It is now read-only.
For processing and plotting of the data from the SATAY experiments, typically many different files need to be combined.
To make this a bit easier, the python script 'genomicfeatures_dataframe_with_normalization.py' is developed that creates a dataframe that includes information about various features in a chromosome (e.g. genes, telomeres, centromeres, ARS, etc.) and the number of reads and insertions.
It also includes a normalization procedure from 'reads_normalization.py'.
The text was updated successfully, but these errors were encountered:
Number of insertions per basepair in central 80% of gene
Number of reads per basepair
Number of reads in central 80% of gene per basepair
Number of reads per basepair normalized
Number of reads per basepair in central 80% of gene normalized
Number of reads per basepair in central part of gene normalized where the average number of basepairs in the noncoding regions in each window is defined as 1.
To use this function in any python script, make sure that the input matches the help-description at the beginning of the function and that all the required files are present (the location of the files are noted in the function).
The output is the variable dna_df2 that includes the dataframe.
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For processing and plotting of the data from the SATAY experiments, typically many different files need to be combined.
To make this a bit easier, the python script 'genomicfeatures_dataframe_with_normalization.py' is developed that creates a dataframe that includes information about various features in a chromosome (e.g. genes, telomeres, centromeres, ARS, etc.) and the number of reads and insertions.
It also includes a normalization procedure from 'reads_normalization.py'.
The text was updated successfully, but these errors were encountered: