- Added the ~plasmapy.particles.particle_class.Particle.nucleus attribute of . (
2538
) - Replaced
plasmapy.utils.data.downloader.get_file
with a new class ~plasmapy.utils.data.downloader.Downloader with a method ~plasmapy.utils.data.downloader.Downloader.get_file which downloads resource files from . (2570
) - Added support for new
background
,ion_mu
andion_z
fitting parameters to the ~plasmapy.diagnostics.thomson.spectral_density_model function. (2636
)
- Added the
internal
category for changelog entries, which will be used to denote refactorings with minimal impact on the API, and updated the to reflect these changes. (2441
) - Updated the docstring of to indicate that annotations for optional parameters should now be
ParticleLike | None
orParticleListLike | None
. (2505
) - Added known limitations of to its docstring. (
2516
) - Removed references to PlasmaPy's Twitter account, which is no longer used. (
2522
) - Updated the docstring for ~plasmapy.formulary.lengths.gyroradius to finish an unfinished sentence. (
2560
) - Updated the instructions in the on how to build PlasmaPy's documentation locally. (
2565
) - Fix typo in description of ~plasmapy.formulary.densities.mass_density. (
2588
) - Updated the to reflect recent performance improvements with via the
tox-uv
extension, and the to reflect that the documentation is now built with instead of (2590
) - Add examples to the docstring for ~plasmapy.formulary.radiation.thermal_bremsstrahlung. (
2618
) - Update the dependency version support policy in the . (
2670
)
- Changed the minimum required version of Python from 3.9 to 3.10. (
2501
) - Modified ~plasmapy.particles.atomic.common_isotopes, ~plasmapy.particles.atomic.known_isotopes, and ~plasmapy.particles.atomic.known_isotopes to each return a . (
2559
) - Added a new keyword
particlewise
to the method ~plasmapy.particles.particle_collections.ParticleList.is_category of , which now causes the function to return a bool for the whole list by default. The old functionality is still available by settingparticlewise
to True. (2648
)
- Fixed an error when
lorentzfactor
and multiple particles are provided to ~plasmapy.formulary.lengths.gyroradius. (2542
) - Required UTF-8 encoding to be used for generating citation output. (
2578
) - Fixed a bug in where particle categorization criteria had not been applied to arguments that became a . (
2594
) - Made ~plasmapy.diagnostics.thomson.spectral_density_model compatible with the new version of
lmfit==1.3.0
. (2623
) - Fixed a bug when ~plasmapy.formulary.radiation.thermal_bremsstrahlung is given multiple input density values. (
2627
) - Fixed the requirements file used by binder to open notebooks. (
2672
)
- Changed type hint annotations to be consistent with
604
. Most type unions are now made using the|
operator rather than with typing.Union. (2504
) - Refactored, parametrized, and expanded the tests for ~plasmapy.formulary.lengths.Debye_length. (
2509
) - Changed type hint annotations that used numbers.Integral, numbers.Real, or numbers.Complex to instead use int, float, or complex, respectively. (
2520
) - Created a environment for regenerating requirements files used in continuous integration (CI) and by integrated development environments (IDEs). This environment is now what is being used in the automated pull requests to regenerate requirements files. Switching from
pip-compile
touv pip compile
now allows requirements files to be created for multiple versions of Python, as well as for minimal versions of dependencies. (2523
) - Reduced the
cognitive complexity
of ~plasmapy.formulary.lengths.gyroradius. (2542
) - Added and updated type hint annotations within plasmapy.formulary. (
2543
) - Applied caching through to speed up continuous integration tests and documentation builds. Because the Python environments used by to run tests no longer need to be recreated every time tests are run, caching speeds up several continuous integration tests by ∼2–3 minutes. See
2585
to learn more about recent efforts to drastically speed up PlasmaPy's continuous integraiton checks. (2552
) - Removed
setup.py
. (2558
) - Added
sphinx-lint
as a hook to find reStructuredText errors. (2561
) - Enabled the tox-uv plugin to , so that package installation, caching, and the creation of virtual environments will be handled by instead of . This change makes it faster to run tests both locally and via . (
2584
) - Changed the project structure to an src layout to follow the updated recommendation from the Python Packaging Authority's packaging guide. The motivation for this change is described in
2581
. Source code previously inplasmapy/
is now located in and tests are now in a separate directory. Tests previously inplasmapy/**/tests/
are now intests/**/
, where**
refers to an arbitrary number of subdirectories. For example, the source code of plasmapy.formulary is now located insrc/plasmapy/formulary/
and the tests for plasmapy.formulary are now intests/formulary/
. (2598
) - Reconfigured the auto-generated requirements files used during continuous integration and for documentation builds, while adding corresponding documentation. (
2650
) - Added
noxfile.py
as a configuration file for . This file initially contains environments for building documentation, checking hyperlinks, and performing static type checking with (2654
) - Began using for some testing environments in , including for the documentation build and static type checking. (
2656
)
- Updated type hint annotations in plasmapy.particles. (
2458
) - Added
pytest-rerunfailures
to thetests
set of dependencies defined inpyproject.toml
, and applied it to a test that experiences intermittent failures. (2483
) - Added a flag to ~plasmapy.plasma.grids.AbstractGrid.require_quantities to silence warnings when a quantity is not provided and is assumed to be zero everywhere. Modified ~plasmapy.simulation.particle_tracker.ParticleTracker to not display this warning for the E and B field components, since one of these is often not explicitly provided. (
2519
) - Removed as a runtime dependency. (
2525
) - Removed the unused
py310-conda
environment. (2526
) - Exposed ~plasmapy.formulary.dielectric.StixTensorElements and ~plasmapy.formulary.dielectric.RotatingTensorElements to the public API. (
2543
) - Added tests to verify correctness of two properties in ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies. (
2614
)
- Created new ~plasmapy.simulation.particle_tracker.ParticleTracker object for general particle pushing simulations involving electromagnetic fields. The tracker replaces the old
~plasmapy.simulation.particletracker.ParticleTracker
. (2245
) - Imports of classes and functions from plasmapy.utils must now be made directly from the subpackages and modules, rather than from plasmapy.utils itself. (
2403
) - Moved
mass_density
and its aliasrho_
from plasmapy.formulary.misc to plasmapy.formulary.densities. (2410
)
- Added a
notch
argument to ~plasmapy.diagnostics.thomson.spectral_density, which allows users to output spectrum over one or multiple wavelength ranges to correspond to a notch filter commonly applied to experimentally measured Thomson scattering spectra. Changed the ~plasmapy.diagnostics.thomson.spectral_density_model function to allownotch
to be applied during fitting. (2058
) - Changed unit annotations to type hint annotations. (
2421
) - Enabled to decorate functions which have variadic positional arguments followed by keyword arguments. See
2150
. (2428
) - Added a
random_seed
keyword in the ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiography.Tracker.create_particles method of the ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiography.Tracker class to make the function deterministic to resolve intermittent test failures. (2487
)
- Enabled to be compatible with postponed evaluation of annotations (see
563
). (2479
)
- Switched from
sphinx_toolbox.collapse
tosphinx_collapse
for including collapsible content in our documentation. (2387
) - Added a discussion of in the within the . (
2440
)
- Added Python 3.12 to the suite of continuous integration tests. (
2368
) - Added a GitHub Action that will create an issue containing a release checklist, which will largely supersede the release process outlined in the . (
2376
) - Separated the GitHub Action for checking hyperlinks in the documentation into its own GitHub Action. (
2392
) - Replaced with in the configuration. (
2394
) - Modified the
__exit__
method ofHDF5Reader
for context management. (2402
) - Added an initial configuration for that temporarily ignores existing errors. (
2424
) - Added a environment for running . (
2431
) - Added to the suite of continuous integration checks. (
2432
) - Used
autotyping
to implement for special methods like__init__
and__str__
, and changed-> typing.NoReturn
annotations to-> None
. (2437
) - Used
autotyping
to add-> None
return annotations to functions and methods with noreturn
statement. (2439
) - Added a stub file containing for
@wrapt.decorator
. (2442
) - Improved for plasmapy.particles.decorators, which includes , and the corresponding tests. (
2443
) - Dropped the hook for
isort
and enabled allisort
rules in . (2453
) - Added a
py.typed
marker to indicate that PlasmaPy contains type hint annotations as per561
. (2473
) - Changed
_nearest_neighbor_interpolator
method in ~plasmapy.plasma.grids to interpolate quantities array instead of producing an intermediate index. (2475
) - Enabled the
sphinx
linkchecker in quiet mode to make it easier to find problem links from the console output. (2476
) - Bumped the minimum versions of dependencies to drop support for minor releases older than two years old. In particular, the minimum version of NumPy was bumped to
1.23.0
. (2488
)
- Renamed the
plasmapy.dispersion.dispersionfunction
module to plasmapy.dispersion.dispersion_functions. Both ofplasma_dispersion_func
andplasma_dispersion_func_deriv
are temporarily still available, but will issue a ~plasmapy.utils.exceptions.PlasmaPyFutureWarning and will be removed in a subsequent release. (2271
) - Removed the for ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func and ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func_deriv. Instead, the performance of the original functions has been improved by using a
try
andexcept
block instead of having multipleif
statements to check for preconditions. (2361
) - Providing a real number to the
charge
parameter in will now result in a instead of a deprecation warning. Now,charge
must be a with units of electrical charge. To express the charge as a multiple of the elementary charge, provide a real number to theZ
parameter instead. (2369
)
- Added the ~plasmapy.plasma.equilibria1d.HarrisSheet class to calculate magnetic field, current density, and plasma pressure for 1D Harris sheets. (
2068
) - Added module plasmapy.dispersion.analytical.mhd_waves_ with classes for storing and calculating parameters of magnetohydrodynamic waves. (
2206
) - Added the plasmapy.analysis.time_series.conditional_averaging module including the ~plasmapy.analysis.time_series.conditional_averaging.ConditionalEvents class for calculating the conditional average and variance of time series. (
2275
) - Added the ~plasmapy.plasma.cylindrical_equilibria.ForceFreeFluxRope class to calculate magnetic field for the Lundquist solution for force-free cylindrical equilibria. (
2289
)
- Fixed a bug that had been causing incorrect results in ~plasmapy.formulary.collisions.helio.collisional_analysis.temp_ratio. (
2248
) - Enabled the
time_step
parameter in ~plasmapy.analysis.time_series.excess_statistics.ExcessStatistics class to be a with a unit. (2300
)
- Updated the in the to describe how to use
git pull
. (2193
) - Expanded the troubleshooting section of the to describe how to resolve warnings related to documents not being included in any toctrees. (
2257
) - Added a step to the about using
git status
to verify that there have been no changes to tracked files before creating and switching to a new branch. (2263
) - Added a page to the about , including how to troubleshoot test failures. (
2265
) - Added
CONTRIBUTING.md
to PlasmaPy's GitHub repository. This page refers contributors to PlasmaPy's . (2266
) - Enabled the sphinx.ext.duration extension to show the times required to process different pages during documentation builds. (
2268
) - Enabled the sphinx.ext.viewcode extension for adding links in the documentation to pages containing the source code. (
2269
) - Moved definitions of certain substitutions from
docs/common_links.rst
to the filedocs/contributing/doc_guide.rst
in order to speed up the documentation build (see2277
). (2272
) - Implemented
sphinxcontrib-globalsubs
to enable global substitutions to be used throughout the documentation, and moved the definition of substitutions fromdocs/common_links.rst
to theglobal_substitutions
dict indocs/_global_substitutions.py
. (2281
) - Changed
from astropy import units as u
toimport astropy.units as u
andfrom astropy import constants as const
toimport astropy.constants as const
throughout the code in order to increase consistency of import statements. (2282
) - Added and applied
nbqa-ruff
to our suite of hooks so that can perform code quality checks on our example notebooks. (2302
) - Renamed
docs/cff_to_rst.py
todocs/_cff_to_rst.py
, and updated the functionality contained within that file for converting author information inCITATION.cff
into a author list to be included in the documentation. (2307
) - Fixed broken hyperlinks and references. (
2308
) - Replaced
from plasmapy.particles import *
indocs/notebooks/getting_started/particles.ipynb
with imports of the actual functions and classes that were used. (2311
) - Applied minor refactorings and formatting improvements to
docs/notebooks/dispersion/stix_dispersion.ipynb
. (2312
) - Updated the by discussing when to use aliases and applied the
:py:
role so that in-line code gets formatted the same as Python code blocks. (2324
) - Updated the docstrings and type hint annotations in plasmapy.formulary.lengths. (
2356
) - Refactored
docs/conf.py
to improve organization. (2363
) - Updated the narrative documentation on particle objects to include , , and objects. (
2377
)
- Modernized
MANIFEST.in
. (2189
) - Applied automated refactorings from Sourcery. (
2219
) - Distributions defined in the ~plasmapy.formulary.distribution module will now raise a ValueError for an improper
units
parameter. (2229
) - Added "decorators" section to the . (
2231
) - Improved the error message issued by ~plasmapy.formulary.speeds.Alfven_speed when the argument provided to
density
has a physical type of number density andion
is not provided. (2262
) - Exposed plasmapy.dispersion.analytical and plasmapy.dispersion.numerical to the plasmapy.dispersion namespace. (
2271
) - Expanded the settings to include more linter rules. (
2295
) - Add linter rules that check for print and
pprint
, as the logging library is generally preferred for production code. (2296
) - Updated and corrected author information in
CITATION.cff
. (2307
) - Reduced the number of warnings emitted by plasmapy.particles during tests by decorating test functions with pytest.mark.filterwarnings. (
2314
) - Fixed a pytest deprecation warning that had been issued by
plasmapy.utils._pytest_helpers/pytest_helpers.run_test
so that None is no longer passed to the pytest.warns context manager. (2314
) - Changed the default configuration for pytest so that if a test is marked as expected to fail actually passes, then that test will issue an error to indicate that the pytest.mark.xfail mark can be removed. (
2315
) - Added a weekly linkcheck test that verifies that hyperlinks in the documentation are up-to-date. (
2328
) - Enabled to accept annotations of the form
u.Quantity[u.m]
, where we have previously runimport astropy.units as u
. (2346
) - Both ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func and ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func_deriv now allow and arguments without raising a ValueError. (
2361
) - Modified the ~plasmapy.particles.particle_class.CustomParticle.charge_number attribute of to return a real number rather than a dimensionless . (
2377
) - Made minor updates to
plasmapy/__init__.py
, including to the top-level package docstring. (2378
) - Improved the consistency and specificity of the names of various GitHub Actions. (
2379
) - Added a hook to validate . (
2380
)
- Loosened the requirement on
ipykernel
for compatibility with Google Colab. (2202
)
- The signature of ~plasmapy.formulary.relativity.relativistic_energy has changed. The parameter
m
has been replaced withparticle
, which now accepts a broader variety of arguments, including but not limited to a representing mass. The parameterv
has been replaced withV
for consistency with other functionality. (1871
) - Changed the minimum required version of Python from 3.8 to 3.9. Accordingly, increased the minimum versions of
numpy
to1.21.0
,pandas
to1.2.0
,h5py
to3.1.0
,scipy
to1.6.0
,voila
to0.3.0
, andxarray
to0.17.0
. (1885
) - Made raise a TypeError when provided with a string. This change was made to avoid potentially ambiguous situations like
ParticleList("He")
which was previously equivalent toParticleList(["H", "e"])
instead of the possibly expected value ofParticleList(["He"])
. (1892
) - In ~plasmapy.dispersion.analytical.two_fluid_.two_fluid, ~plasmapy.dispersion.numerical.hollweg_.hollweg, and ~plasmapy.dispersion.numerical.kinetic_alfven_.kinetic_alfven in plasmapy.dispersion, providing the as a keyword argument (now
Z
, formerlyz_mean
) will no longer override the charge number provided inion
. (2022
,2181
,2182
) - no longer enforces that named
ionic_level
are ions or neutral atoms. For equivalent behavior, name the parameterion
instead. (2034
) - Removed
plasmapy.utils.pytest_helpers
from PlasmaPy's public API. It is still available asplasmapy.utils._pytest_helpers
, but might be removed in the future. (2114
) - Removed
plasmapy.tests.helpers
from PlasmaPy's public API. It is still available asplasmapy.tests._helpers
, but might be removed in the future. (2114
) - The
ion_species
to ~plasmapy.formulary.radiation.thermal_bremsstrahlung has been renamed toion
in order to provide a more consistent API to functions that accept ions as arguments. (2135
)
- In plasmapy.dispersion, the
z_mean
parameter to ~plasmapy.dispersion.analytical.two_fluid_.two_fluid, ~plasmapy.dispersion.numerical.hollweg_.hollweg, and ~plasmapy.dispersion.numerical.kinetic_alfven_.kinetic_alfven has been deprecated. Provide the toZ
instead. (2022
,2181
,2182
) - When a function decorated with is provided with
z_mean
as a keyword , it will changez_mean
toZ
and issue a ~plasmapy.utils.exceptions.PlasmaPyDeprecationWarning if the decorated function acceptsZ
as a parameter. This capability is intended to temporarily preserve the current behavior of several functions in plasmapy.dispersion and plasmapy.formulary as they get decorated with over the next few releases. (2027
) - The
z_mean
parameter to ~plasmapy.formulary.speeds.ion_sound_speed and ~plasmapy.formulary.speeds.Alfven_speed has been deprecated and may be removed in a future release. UseZ
instead. (2134
,2179
)
- Added ~plasmapy.dispersion.numerical.kinetic_alfven_.kinetic_alfven, which numerically solves dispersion relations for kinetic Alfvén waves. (
1665
) - Added the
stix_dispersion.ipynb
notebook which contains Stix cold-plasma dispersion examples. (1693
) - Added the ~plasmapy.formulary.frequencies.Buchsbaum_frequency function. (
1828
) - Decorated ~plasmapy.formulary.frequencies.gyrofrequency with so that it can accept a broader variety of arguments. (
1869
) - After having been decorated with , the ~plasmapy.formulary.relativity.relativistic_energy function now accepts a broader variety of objects rather than only objects representing mass. (
1871
) - After having been decorated with , now accepts a broader variety of objects. (
1871
) - Enabled to accept values of the that are real numbers but not integers. This capability can now be used by many of the functions in plasmapy.formulary and elsewhere that are decorated with . (
1884
) - Decorated ~plasmapy.particles.atomic.reduced_mass with so that it can now accept a broader variety of arguments. (
1921
) - Added the plasmapy.analysis.time_series.excess_statistics module including the ~plasmapy.analysis.time_series.excess_statistics.ExcessStatistics class for calculating excess statistics of time series. (
1984
) - Added plasmapy.formulary.collisions.helio.collisional_analysis. (
1986
) - Enabled to accept objects of physical type mass or electrical charge. (
1987
) - The following functions have been decorated with and now accept a broader variety of arguments (see also
341
):- ~plasmapy.dispersion.analytical.two_fluid_.two_fluid (
2022
) - ~plasmapy.formulary.frequencies.plasma_frequency (
2026
) - ~plasmapy.formulary.speeds.ion_sound_speed (
2134
) - ~plasmapy.formulary.speeds.kappa_thermal_speed (
2136
) - ~plasmapy.formulary.speeds.Alfven_speed (
2179
) - ~plasmapy.dispersion.numerical.hollweg_.hollweg (
2181
) - ~plasmapy.dispersion.numerical.kinetic_alfven_.kinetic_alfven (
2182
)
- ~plasmapy.dispersion.analytical.two_fluid_.two_fluid (
- Refactored ~plasmapy.formulary.lengths.gyroradius to reduce cognitive complexity and increase readability. (
2031
) - Added
mass_numb
andZ
as parameters to functions decorated with in plasmapy.formulary.lengths and plasmapy.formulary.distribution. (2140
)
- When attempting to create a object representing a proton, calls like
Particle("H", Z=1, mass_numb=1)
no longer incorrectly issue a for redundant particle information. (1992
) - Updated the docstring of ~plasmapy.dispersion.numerical.kinetic_alfven_.kinetic_alfven. (
2016
) - Fixed a slight error in ~plasmapy.formulary.frequencies.plasma_frequency and ~plasmapy.formulary.speeds.Alfven_speed when the charge number was provided via
z_mean
(or nowZ
) and inconsistent with the charge number provided toparticle
(or zero, ifparticle
represented an element or isotope with no charge information. Previously, if we represented a proton withparticle="H-1"
andz_mean=1
, then the mass used to calculate the plasma frequency would have been the mass of a neutral hydrogen atom rather than the mass of a proton. However, usingparticle="p+"
would have produced the correct mass. This behavior has been corrected by decorating this function with . See also2178
and2179
. (2026
) - The
plasmapy.analysis.nullpoint._vector_space
function now returns a list for its delta values instead of an array. (2133
)
- Enabled sphinx-codeautolink to make code examples clickable and give quick access to API documentation. (
1410
) - Added an example notebook on ionization states in the solar wind. (
1513
) - Moved the location of the changelog pages for past releases from
docs/whatsnew/
todocs/changelog/
, and set up appropriate redirects. (1639
) - Removed outdated instructions on installing the development version of PlasmaPy contained in
docs/contributing/install_dev.rst
. (1656
) - Converted
docs/CONTRIBUTING.rst
to.github/contributing.md
. (1656
) - Added a new page to the on the , replacing content previously contained in the . (
1656
) - Added a page to the on . (
1656
) - Updated docstrings in plasmapy.formulary.collisions.frequencies. (
1793
) - Updated the docstring for . (
1883
) - Updated the introductory paragraphs to the . (
2014
) - Moved PlasmaPy's vision statement from the online documentation to a Zenodo record. (
2017
) - Restructured the by putting information on writing documentation prior to instructions for building documentation. (
2038
) - Restructured the by putting information on writing tests prior to instructions for running tests. (
2041
) - Updated the introduction on the documentation landing page and the citation instructions. (
2055
) - Updated the . (
2059
) - Added admonitions for functionality that is under development and for which backwards incompatible changes might occur in the future. (
2112
) - Updated the code contribution workflow instructions in the to reflect that first-time contributors should add themselves to the author list in
CITATION.cff
instead of in _. (2155
) - Added functionality to automatically generate the author list included in _ directly from
CITATION.cff
. The script is located atdocs/cff_to_rst.py
. (2156
)
- Included Python 3.11 in continuous integration tests. (
1775
) - Turned the root-level
requirements.txt
into a lockfile for continuous integration purposes. (1864
) - Enabled the particle creation factory in
plasmapy.particles._factory
used by to create instances of an element or isotope with a that is a real number but not an integer. (1884
) - Implemented the new private constructor from
1881
into the private particle creation factory used by . (1884
) - Dropped
dlint
from the tests requirements, as it is no longer being maintained. (1906
) - Modified to allow -like objects with a defined charge to be passed through to decorated functions when a to that function annotated with is named
ion
. Previously, only objects representing ions or neutral atoms were allowed to pass through when the parameter was namedion
. (2034
) - Updated package metadata in
pyproject.toml
. (2075
) - Set minimum versions for all explicitly listed dependencies. (
2075
) - Enabled and applied changes for additional rule sets for
ruff
, and removed correspondingflake8
extensions. (2080
) - Changed from
indexserver
toPIP_INDEX_URL
to index nightly numpy builds (2138
) - Updated the function and docstring of ~plasmapy.formulary.collisions.helio.collisional_analysis. (
2151
) - Dropped
flake8
and its extensions as linters. Instead, is now used as the primary linter. (2170
) - Expanded the variety of arguments that could be provided to a function decorated by ~plasmapy.utils.decorators.converter.angular_freq_to_hz, and refactored this decorator to use
wrapt
. (2175
)
- Moved the charged particle radiography analysis codes into a new module ~plasmapy.diagnostics.charged_particle_radiography containing synthetic radiography tools in ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiography and detector stack calculation tools in ~plasmapy.diagnostics.charged_particle_radiography.detector_stacks. (
1274
) - Changed the ~plasmapy.formulary.lengths.gyroradius function so that it takes relativistic effects into account by default. (
1813
)
- Changed the ~plasmapy.formulary.lengths.gyroradius function so it no longer accepts deprecated
T_i
. (1824
) - Removed
plasmapy.formulary.parameters
, which was deprecated in the0.7.0
release. The functionality in that module had previously been migrated to modules that are broken down by physical type, such as: plasmapy.formulary.densities, plasmapy.formulary.dimensionless, plasmapy.formulary.frequencies, plasmapy.formulary.lengths, plasmapy.formulary.misc, and plasmapy.formulary.speeds. (1833
) - Deprecated providing a real number to the
charge
parameter of to represent the . UseZ
instead. (1866
)
- Added the ~plasmapy.diagnostics.charged_particle_radiography.detector_stacks.Stack and objects to the ~plasmapy.diagnostics.charged_particle_radiography module, which represent a stack of detector media layers. The ~plasmapy.diagnostics.charged_particle_radiography.detector_stacks.Stack.deposition_curves and ~plasmapy.diagnostics.charged_particle_radiography.detector_stacks.Stack.energy_bands methods of ~plasmapy.diagnostics.charged_particle_radiography.detector_stacks.Stack calculate the particle energies deposited in each detector layer. (
1274
) - ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiography.Tracker now supports multiple field grids, provided as an iterable. (
1799
) - Added the plasmapy.analysis.time_series.running_moments module including two functions for calculating running moments of time series. (
1803
) - Added
lorentzfactor
as an optional keyword-only argument to ~plasmapy.formulary.lengths.gyroradius. Also addedrelativistic
as an optional keyword-only argument which can be set to False for the non-relativistic approximation. (1813
) - Modified attributes to return in the appropriate units when undefined rather than raising exceptions. (
1825
) - Added the ~plasmapy.particles.particle_class.CustomParticle.charge_number attribute to . (
1866
) - Added
Z
as a representing the to . (1866
)
- Updated docstrings and annotations in plasmapy.diagnostics.thomson. (
1756
) - Updated the discussion on type descriptions and parameter descriptions for docstrings in the . (
1757
) - Updated troubleshooting sections of the . (
1817
) - Added a summary section to the . (
1823
) - Updated the . (
1826
) - Reorganized the . (
1856
) - Added a documentation page on performance tips. (
1887
)
- Updated warning messages in ~plasmapy.formulary.collisions.coulomb.Coulomb_logarithm. (
1586
) - Transferred most of the contents of
setup.py
andsetup.cfg
topyproject.toml
(see518
and621
). Simplifiedextras
requirements (pip install plasmapy[all]
and[extras]
are gone). (1758
) - Added blacken-docs to the configuration. (
1807
) - Removed
pytest-xdist
from the testing requirements (see also750
). (1822
) - Refactored tests of ~plasmapy.formulary.relativity.Lorentz_factor and ~plasmapy.formulary.relativity.relativistic_energy. (
1844
) - Applied refactorings from
ruff
andrefurb
to plasmapy.utils. (1845
) - Applied changes from
refurb
to plasmapy.particles. (1846
) - Applied changes from
refurb
to plasmapy.formulary. (1847
) - Apply changes from
ruff
andrefurb
to plasmapy.analysis, plasmapy.diagnostics, plasmapy.dispersion, and plasmapy.plasma. (1853
) - Added ruff to the
pre-commit
configuration. (1854
) - Added the
strict
andallowed_physical_types
parameters toplasmapy.utils._units_helpers._get_physical_type_dict
. (1880
) - Added a private constructor method to with an API that is better suited for use in and the particle factory function used by . (
1881
) - Dropped the dependency on
cached-property
in favor of functools.cached_property. (1886
)
- Removed the
none_shall_pass
parameter from . Instead, typing.Optional should be used to create the annotation (e.g.,Optional[ParticleLike]
). (1057
) - Renamed the first of from
wrapped_function
towrapped
. (1057
) - Refactored the return pattern of ~plasmapy.analysis.swept_langmuir.floating_potential.find_floating_potential to follow the
(vf, extras)
pattern, wherevf
is the computed floating potential andextras
is an instance of ~plasmapy.analysis.swept_langmuir.floating_potential.VFExtras containing extra parameters from the computation. (1565
) - Moved
plasmapy.particles.particle_collections.ionic_levels
to plasmapy.particles.atomic.ionic_levels. (1697
) - Deprecated
plasmapy.formulary.collisions.fundamental_electron_collision_freq
. The ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies.Maxwellian_avg_ei_collision_freq attribute of ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies should be used instead. (1703
) - Deprecated
plasmapy.formulary.collisions.fundamental_ion_collision_freq
. The ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies.Maxwellian_avg_ii_collision_freq attribute of ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies should be used instead. (1703
) - The parameters
Z
andmass_numb
are now for ~plasmapy.particles.symbols.ionic_symbol and ~plasmapy.particles.symbols.particle_symbol. (1718
) - Moved the
valid_categories
attribute of ~plasmapy.particles.particle_class.AbstractPhysicalParticle.is_category to plasmapy.particles.particle_class.valid_categories. (1720
) - Changed the behavior of , , and so that an equality comparison with an object of a different type returns False instead of raising a TypeError. (
1721
) - When the argument provided to ~plasmapy.formulary.magnetostatics.GeneralWire is not callable, a TypeError will be raised instead of a ValueError. (
1782
) - In ~plasmapy.diagnostics.thomson.spectral_density and ~plasmapy.diagnostics.thomson.spectral_density_model, a TypeError is now raised when
ions
is an unsupported type. (1782
) - In ~plasmapy.plasma.grids.AbstractGrid, a TypeError is now raised instead of a ValueError when
start
orstop
are not of the appropriate type. (1783
)
- The capability of to process arguments annotated with or
(Particle, Particle)
is now deprecated and will be removed in a future release. Use as an annotation instead. (1057
) - The
integer_charges
attribute of has been removed after being deprecated inv0.7.0
. Use ~plasmapy.particles.ionization_state.IonizationState.charge_numbers instead. (1633
) - The
integer_charge
attributes of and have been removed after being deprecated inv0.7.0
. Use thecharge_number
attribute instead. (1633
) - The
plasmapy.particles.atomic.integer_charge
function has been removed after being deprecated inv0.7.0
. Use ~plasmapy.particles.atomic.charge_number instead. (1633
) - Deprecated plasmapy.formulary.collisions.frequencies.collision_frequency in favor of collision frequency classes in plasmapy.formulary.collisions. See also
1703
. (1676
)
- Expanded the functionality of the decorator to convert and arguments into , , and objects. This change is part of an ongoing effort to improve compatibility of functions in subpackages like plasmapy.particles and plasmapy.formulary with and objects. (
1057
) - Added the ~plasmapy.analysis.swept_langmuir.ion_saturation_current.find_ion_saturation_current function to the ~plasmapy.analysis.swept_langmuir module. The function fits the tail of a swept Langmuir probe trace and returns the linear fit corresponding to the ion-saturation current. (
1469
) - Created plasmapy.utils.data to contain functionality for downloading data from . This module contains a new prototype function
plasmapy.utils.data.downloader.get_file
which downloads a file from the repository. (1486
) - Added the class to facilitate calculation of the relativistic properties of a body in motion. (
1540
) - Added
inplace
as an optional argument to ~plasmapy.simulation.particle_integrators.boris_push. (1556
) - Added a function to calculate the dimensionless Lundquist number. (
1642
) - Created the plasmapy.formulary.densities module. (
1664
) - Added ~plasmapy.formulary.densities.critical_density to calculate the critical density of a plasma for a given frequency of radiation. (
1664
) - Added the
plasmapy.formulary.collisions.CollisionFrequencies
class. This class can be used to calculate collision frequencies for two interacting species in a plasma. Superseded by1703
. (1676
) - Reimplemented ~plasmapy.formulary.quantum.chemical_potential. (
1678
) - Allowed ~plasmapy.formulary.relativity.Lorentz_factor to accept and return values. (
1681
) - Added a test for ~plasmapy.formulary.dimensionless.Hall_parameter in
plasmapy/formulary/test/test_dimensionless.py
. (1689
) - Replaced usage of os.path with the more modern pathlib. (
1690
) - Replaced
pkg_resources
with the more modern importlib.metadata. (1692
) - Added the ~plasmapy.particles.particle_class.CustomParticle.categories attribute to , and added the
"custom"
particle category. (1700
) - Moved the
is_category
method of to ~plasmapy.particles.particle_class.AbstractPhysicalParticle. This method is now inherited by both and . (1700
) - Added ~plasmapy.formulary.collisions.frequencies.MaxwellianCollisionFrequencies for calculating relevant collision frequencies for Maxwellian populations. (
1703
) - Refactored ~plasmapy.formulary.collisions. The file
collisions.py
was converted into a subpackage (directory) and it's contents was split into appropriately categorized and named sub-modules (files). (1769
)
- Modified tests in the class
TestSyntheticRadiograph
to try to fix an intermittent failure oftest_optical_density_histogram
. (1685
)
- Added the Hollweg dispersion notebook. (
1392
) - Creates an example notebook for fitting Thomson scattering spectra using the ~plasmapy.diagnostics.thomson.spectral_density_model function. (
1520
) - Updated the following the
0.8.1
release. (1615
) - Added
docs/whatsnew/dev.rst
as a stub file for the changelogs between releases. (1623
) - Added customizations for in
pyproject.toml
. (1626
) - Updated the introductory paragraphs of the . (
1649
) - Added a section to the on best practices for naming variables. (
1650
) - Updated the section of the contributor guide on , and moved it to
docs/contributing/install_dev.rst
. (1651
) - Added sections to the on units and particles. (
1655
) - Updated the section of the on code style. (
1657
) - Added sections to the on
lite-functions
andaliases
. (1658
) - Added sections to the on imports and requirements. (
1659
) - Added sections on best practices for comments and error messages to the . (
1660
) - Updated the section of the with more detail on the "Parameters", "Raises", and "Warns" sections of docstrings. (
1667
) - Added a guideline to the specifying how values should be treated in functions that accept or inputs. (
1673
) - Added an admonition to the that describes how to change links for removed code objects into inline literals in old changelog entries. (
1674
) - Split the patent clause from the license file (
LICENSE.md
) into its own file (PATENT.md
). (1686
) - Added explanatory text to the "Notes" sections in the docstrings for functions within ~plasmapy.formulary.magnetostatics. (
1695
) - Enabled
:py:
as a role for inline code formatting in the documentation. (1698
) - Increased the minimum version of to 5.0.0. (
1698
) - Updated docstrings and annotations for and its methods. (
1713
) - Updated docstrings and annotations in plasmapy.particles, including by marking parameters as or . (
1718
) - Added a section to the on troubleshooting. (
1752
)
- Moved the functionality responsible for converting arguments to particle objects from the decorator into a separate class that is now used inside . (
1057
) - Added wrapt as a dependency. (
1057
) - The decorator now processes arguments annotated with . (
1057
) - Added
tomli
to thetests
category of requirements. (1500
) - Added tests to verify that the requirements given in the
.txt
files in therequirements
directory are consistent with the requirements given insetup.cfg
andpyproject.toml
. (1500
) - Restricted the required version of sphinx-gallery to
< 0.11.0
, sincesphinx-gallery
changed their thumbnail containers to flex containers. See pull request sphinx-gallery/#906 and issue sphinx-gallery/#905 for more detail. (1654
) - Moved the
plasmapy.formulary.dimensionless.quantum_theta
function to plasmapy.formulary.quantum.quantum_theta. This function can still be called from the plasmapy.formulary.dimensionless module without issue. (1671
) - Reimplemented
plasmapy.formulary.quantum._chemical_potential_interp
. (1678
) - Re-enabled value testing for the
quantum
keyword argument in ~plasmapy.formulary.collisions.dimensionless.coupling_parameter. (1678
) - Increased the minimum version of to 1.20.0. (
1694
) - Added the ~plasmapy.utils.decorators.validators.validate_class_attributes decorator to the ~plasmapy.utils.decorators module. This decorator is useful for class methods that require optional parameters to be specified during class instantiation. (
1703
) - Made minor improvements to
plasmapy.formulary.collisions.CollisionFrequencies
. (1705
) - Changed the requirement to
>= 19.2.0, < 22.8.0
. Superseded by1717
. (1710
) - Applied automated refactorings from Sourcery. (
1714
) - Changed the minimum version of to 22.8.0 and the minimum version of _ to 1.2.0. (
1717
) - Changed ~plasmapy.formulary.quantum.chemical_potential to use the
Broyden-Fletcher-Goldfarb-Shanno algorithm
to implicitly solve for the ideal chemical potential. (1726
) - Increased the minimum version of to 5.0.1. (
1727
) - Simplified the pull request template. (
1729
) - Added a GitHub Action to automatically comment on pull requests with a code review checklist. (
1729
) - The following functions are now decorated by : ~plasmapy.formulary.dimensionless.Hall_parameter, ~plasmapy.formulary.distribution.kappa_velocity_1D, ~plasmapy.formulary.distribution.kappa_velocity_3D, ~plasmapy.formulary.distribution.Maxwellian_1D, ~plasmapy.formulary.distribution.Maxwellian_velocity_2D, ~plasmapy.formulary.distribution.Maxwellian_velocity_3D, ~plasmapy.formulary.distribution.Maxwellian_speed_1D, ~plasmapy.formulary.distribution.Maxwellian_speed_2D, ~plasmapy.formulary.distribution.Maxwellian_speed_3D, ~plasmapy.formulary.lengths.gyroradius, and ~plasmapy.formulary.quantum.deBroglie_wavelength. (
1732
) - Changed to raise a ~astropy.units.UnitConversionError when the annotated argument has a physical type other than mass or electrical charge. (
1732
) - Set up issue forms on to replace issue templates. (
1733
) - Made
pytest
aninstall
requirement instead of atesting
requirement. (1749
) - Added a step to validate
CITATION.cff
as part of thelinters
testing environment. (1771
) - Added
cffconvert
to thetesting
requirements. (1771
) - Deleted
codemeta.json
, which recorded project metadata using the CodeMeta metadata schema. Instead, project metadata is now stored inCITATION.cff
which uses the Citation File Format and was created in1640
. See also676
and794
. (1772
) - Added the
flake8
extensionsflake8-use-pathlib
,flake8-builtins
, andflake8-comments
to the testing requirements. (1777
) - Added
tryceratops
as aflake8
extension. (1782
)
- In ~plasmapy.diagnostics.thomson.spectral_density, the arguments
Te
andTi
have been renamedT_e
andT_i
and are now requiredkeyword-only
arguments. (#974) - Moved the
grid_resolution
attribute from ~plasmapy.plasma.grids.AbstractGrid to ~plasmapy.plasma.grids.CartesianGrid and ~plasmapy.plasma.grids.NonUniformCartesianGrid separately. This fixes a potential future bug, because this attribute is only valid as written when all axes share the same units. (#1295) - Changed the behavior of the
__repr__
method of to display the symbol as well if it was provided. (#1397) - Removed a block of code that printed out special particle properties when
plasmapy.particles.special_particles
(renamed toplasmapy.particles._special_particles
) was executed. (#1440) - Renamed
plasmapy.particles.elements
toplasmapy.particles._elements
,plasmapy.particles.isotopes
toplasmapy.particles._isotopes
,plasmapy.particles.parsing
toplasmapy.particles._parsing
, andplasmapy.particles.special_particles
toplasmapy.particles._special_particles
. Consequently, these modules are no longer part of PlasmaPy's public API. Most of these modules did not contain any public objects, except forplasmapy.particles.special_particles.ParticleZoo
which was renamed toplasmapy.particles._special_particles.particle_zoo
and removed from the public API. (#1440) - The parameters
Z
andmass_numb
to are nowkeyword-only
. (#1456)
- Officially deprecated plasmapy.formulary.parameters and scheduled its permanent removal for the
v0.9.0
release. (#1453) - Dropped support for Python 3.7 in accordance with the deprecation policy laid out in NumPy Enhancement Proposal 29. (#1465)
- The
[all]
option when using to install plasmapy is now deprecated and may be removed in a future release. Packages that were previously optional (, , , and ) are now installed by default when runningpip install plasmapy
. To install all packages required for code development of PlasmaPy, instead runpip install plasmapy[developer]
. (#1482) - Removed
plasmapy.optional_deps
. (#1482)
- ~plasmapy.diagnostics.thomson.spectral_density and ~plasmapy.diagnostics.thomson.spectral_density_model now support ~plasmapy.particles.particle_collections objects as input to the
ions
keywords. (#974) - Created a
lite-function
for ~plasmapy.diagnostics.thomson.spectral_density, ~plasmapy.diagnostics.thomson.spectral_density_lite. (#974) - Added a fitting function for 1D spectra, ~plasmapy.diagnostics.thomson.spectral_density_model, to the Thomson scattering diagnostic module. (#974)
- Created function
plasmapy.formulary.parameters.thermal_speed_coefficients
to supportplasmapy.formulary.parameters.thermal_speed_lite
usage by calculating the various thermal speed coefficients.plasmapy.formulary.parameters.thermal_speed_coefficients
is also bound toplasmapy.formulary.parameters.thermal_speed
as thecoefficients
attribute. (#1145) - Created decorator ~plasmapy.utils.decorators.lite_func.bind_lite_func for handling the binding of
lite-functions
and any supporting functions to a parent function. (#1145) - Introduced the concept of
lite-functions
, by creating the lite-functionplasmapy.formulary.parameters.thermal_speed_lite
, which is a simplified and jitted version ofplasmapy.formulary.parameters.thermal_speed
. These functions are intended for computational use and as such have no validation of input or output values.plasmapy.formulary.parameters.thermal_speed_lite
is also bound toplasmapy.formulary.parameters.thermal_speed
as thelite
attribute. (#1145) - Added the
hollweg_.py
module to the ~plasmapy.dispersion.numerical subpackage to numerically solve the dispersion relation using Hollweg's method :citehollweg:1999,bellan:2012
. (#1189) - Implemented non-breaking speed improvements on the methods ~plasmapy.plasma.grids.CartesianGrid.nearest_neighbor_interpolator and ~plasmapy.plasma.grids.CartesianGrid.volume_averaged_interpolator for ~plasmapy.plasma.grids.CartesianGrid. The new interpolators now require that the grid axes be sorted, which is always true for uniform grids. Added a new test to ensure this stays true. (#1295)
- Refactored the interpolator methods on objects defined in ~plasmapy.plasma.grids. All interpolators are now defined in the subclasses of ~plasmapy.plasma.grids.AbstractGrid. Calling the interpolator methods on ~plasmapy.plasma.grids.AbstractGrid raises a NotImplementedError exception. (#1295)
- Created
lite-function
plasmapy.formulary.parameters.plasma_frequency_lite
. (#1308) - Added the ~plasmapy.particles.particle_class.molecule function to build objects from a str representing a molecule symbol. (#1309)
- Added the ~plasmapy.particles.particle_collections.ParticleList.is_category method for objects. This method is analogous to the ~plasmapy.particles.particle_class.Particle.is_category method for objects. (#1378)
- Created the prototype analysis tool plasmapy.analysis.nullpoint for finding the null points in a vector space using the trilinear interpolation method of :citehaynes:2007. (#1383)
- Created plasmapy.formulary.lengths to contain length related plasma parameters, and migrated ~plasmapy.formulary.lengths.Debye_length, ~plasmapy.formulary.lengths.gyroradius, and ~plasmapy.formulary.lengths.inertial_length from plasmapy.formulary.parameters to the new module. Related aliases were also migrated. (#1434)
- Created plasmapy.formulary.frequencies to contain frequency related plasma parameters, and migrated ~plasmapy.formulary.frequencies.gyrofrequency, ~plasmapy.formulary.frequencies.plasma_frequency, ~plasmapy.formulary.frequencies.plasma_frequency_lite, ~plasmapy.formulary.frequencies.lower_hybrid_frequency, and ~plasmapy.formulary.frequencies.upper_hybrid_frequency from plasmapy.formulary.parameters to the new module. Related aliases were also migrated. (#1439)
- Migrated ~plasmapy.formulary.dimensionless.Debye_number, and ~plasmapy.formulary.dimensionless.Hall_parameter from plasmapy.formulary.parameters to plasmapy.formulary.dimensionless. Related aliases were also migrated. (#1444)
- Created plasmapy.formulary.speeds to contain frequency related plasma parameters, and migrated ~plasmapy.formulary.speeds.Alfven_speed, ~plasmapy.formulary.speeds.ion_sound_speed, ~plasmapy.formulary.speeds.kappa_thermal_speed, ~plasmapy.formulary.speeds.thermal_speed, ~plasmapy.formulary.speeds.thermal_speed_coefficients, and ~plasmapy.formulary.speeds.thermal_speed_lite from plasmapy.formulary.parameters to the new module. Related aliases were also migrated. (#1448)
- Created plasmapy.formulary.misc to contain functionality for miscellaneous plasma parameters, and migrated
~plasmapy.formulary.misc._grab_charge
, ~plasmapy.formulary.misc.Bohm_diffusion, ~plasmapy.formulary.misc.magnetic_energy_density, ~plasmapy.formulary.misc.magnetic_pressure, ~plasmapy.formulary.misc.mass_density, and ~plasmapy.formulary.misc.thermal_pressure from plasmapy.formulary.parameters to the new module. Related aliases were also migrated. (#1453) - Created
lite-functions
~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func_lite and ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func_deriv_lite for ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func and ~plasmapy.dispersion.dispersion_functions.plasma_dispersion_func_deriv respectively. (#1473) - Created
lite-function
plasmapy.formulary.dielectric.permittivity_1D_Maxwellian_lite for plasmapy.formulary.dielectric.permittivity_1D_Maxwellian. (#1476) - Added the
stix_.py
module to the ~plasmapy.dispersion.analytical subpackage which contains the Stix cold-plasma dispersion solution~plasmapy.dispersion.analytical.stix_.stix
, :citestix:1992,bellan:2012
. (#1511) Particle("Li").ionize()
no longer results in a ~plasmapy.particles.exceptions.ChargeError. Instead, ionization of a neutral atom is assumed. (#1514)- Created the typing construct and added
particle-list-like
to the . (#1528) - Added a null point classifier function which determines the type of a given 3D magnetic null point. (#1554)
- Added support for arbitrarily shaped input arrays to the function plasmapy.formulary.collisions.lengths.impact_parameter. (#1604)
- Fixed a bug in the
_make_grid
method of ~plasmapy.plasma.grids.AbstractGrid that would fail to smoothly handle invalid user input if thestart
,stop
, ornum
keywords were not the correct type. (#1295) - Fixed a bug with where
Particle("p+") == Particle("H", Z=1, mass_numb=1)
led to a . (#1366) - For
plasmapy.formulary.parameters.gyroradius
, updated the default keyword arguments and conditional for issuing the ~plasmapy.utils.exceptions.PlasmaPyFutureWarning. This addresses the incorrect behavior where a ValueError is raised if an array is passed to the deprecated keywordT_i
. (#1430) - Exposed plasmapy.formulary.misc to the plasmapy.formulary namespace. (#1471)
- Replaced misuse of
max_exp_bias - max_exp_bias
withmax_exp_bias - min_exp_bias
when creating seed parameters for the bimaxwellian fit function inside~plasmapy.diagnostics.langmuir.get_electron_temperature
. (#1487) - Corrected the improper inversion of the electron temperature for the non-bimaxwellian case for
~plasmapy.diagnostics.langmuir.get_electron_temperature
. The electron temperature, and not the slope, is a fit parameter of the curve used by~plasmapy.diagnostics.langmuir.get_electron_temperature
, so there is no need for the inversion. The returned value is now the electron temperature and not its reciprocal. (#1487) - Exposed the ~plasmapy.analysis and ~plasmapy.dispersion subpackages to the plasmapy namespace. (#1512)
- Changed the
~plasmapy.analysis.fit_functions.Linear.curve_fit
method on plasmapy.analysis.fit_functions.Linear so that the arbitrary keyword arguments get passed to scipy.stats.linregress. Previously,~plasmapy.analysis.fit_functions.Linear.curve_fit
had accepted arbitrary keyword arguments but did not pass them along to ~scipy.stats.linregress. (#1518) - Fixed a bug in
~plasmapy.dispersion.numerical.hollweg_.hollweg
that did not allow for argumentstheta
andk
to simultaneously be arrays. (#1529) - Fixed the
Z
dependence in ~plasmapy.formulary.collisions.frequencies.fundamental_electron_collision_freq, by replacingn_e
withn_i
while calling ~plasmapy.formulary.collisions.frequencies.collision_frequency. (#1546) - Updated the regular expression matching used by ~plasmapy.particles.particle_class.Particle to parse and identify a string. This fixes the bug where a string with a trailing space (e.g.
"Ar "
) was converted into a negatively charged ion (e.g."Ar -1"
). (#1555) - Exposed plasmapy.formulary.radiation and functions therein to the plasmapy.formulary namespace. (#1572)
- Added a
lite-function
group to the configuration valueautomodapi_custom_groups
that introduces the__lite_funcs__
dunder for listing the lite-functions in a module (akin to the__all__
dunder). (#1145) - Added a page in the that describes how to add changelog entries. (#1198)
- Created an example notebook that lets users input plasma properties and get plasma parameters. (#1229)
- The file
docs/_static/css/admonition_color_contrast.css
was added to include color customizations for admonitions that originally came from sphinx_rtd_theme_ext_color_contrast. (#1287) - Changed the color contrast of links and admonitions to be consistent with the Web Content Accessibility Guidelines 2 Level AA Conformance for contrast. (#1287)
- Re-organized CSS files for the online documentation. The file
docs/_static/rtd_theme_overrides.css
was re-organized, renamed todocs/_static/css/plasmapy.css
, and updated with comments to help someone unfamiliar with CSS to understand the file and syntax. (#1287) - Put references from plasmapy.formulary into
docs/bibliography.bib
in BibTeX format. (#1299) - Added a discussion of test parametrization with argument unpacking to the in the . (#1316)
- Adopted the Contributor Covenant Code of Conduct version 2.1 and updated the
Contributor Covenant Code of Conduct <plasmapy-code-of-conduct>
page accordingly. (#1324) - Updated deprecated meeting and calendar links in
README.md
. (#1327) - Enabled the sphinx-hoverxref extension to . (#1353)
- Added bullet points on module level docstrings and
__all__
to the documentation guide. (#1359) - Reverted the code syntax highlighting style back to the
pygments
default. The minimum version ofpygments
was set to2.11.0
because the default style was changed to meet accessibility guidelines for contrast in this release. (#1361) - Described additional environments for building the documentation with make in the . (#1373)
- Moved references from individual docstrings to the . (#1374)
- Fixed the docstring of ~plasmapy.formulary.collisions.dimensionless.coupling_parameter. (#1379)
- Added an example notebook that introduces how to use astropy.units. (#1380)
- Added a "Getting Started" page to the documentation sidebar and a "Getting Started" section to the examples gallery. (#1380)
- Added an example notebook that introduces how to use plasmapy.particles. (#1382)
- Described the in the narrative documentation. (#1390)
- Updated the cold magnetized plasma dielectric permittivity tensor notebook. (#1396)
- Configured the extension sphinx-hoverxref. (#1437)
- Removed the following files from
docs/api_static
:plasmapy.particles.elements.rst
,plasmapy.particles.isotopes.rst
,plasmapy.particles.parsing.rst
, andplasmapy.particles.special_particles.rst
. These files corresponded to modules that were renamed with a leading underscore to indicate that they are no longer part of the public API. (#1440) - Updated the docstring for plasmapy.particles.particle_class.molecule. (#1455)
- Hid the documentation page that contained the subpackage stability matrix. (#1466)
- Added a discussion of doctests to the . (#1478)
- Removed the section on package requirements from the instructions on how to install plasmapy. (#1482)
- Updated the instructions on how to install plasmapy. (#1482)
- Defined
autodoc_typehints_format="short"
so signature type hints are displayed in short form, i.e. without the leading module names. (#1488) - Set minimum version of sphinx to
v4.4
. (#1488) - Defined the
nitpick_ignore_regex
configuration variable indocs/conf.py
to specify regular expressions for objects to ignore in nitpicky documentation builds. (#1509) - Made numerous minor updates and fixes to links in docstrings and the narrative documentation. (#1509)
- Described the GitHub Action for codespell in the . (#1530)
- Added the _ extension to to simplify linking to GitHub issues, pull requests, users, and commits. (#1532)
- Added the sphinx.ext.extlinks extension to to simplify adding links to external domains which have a common base URL. (#1532)
- Added the _ extension to so that the documentation now has a
404 <HTTP_404>
page in the same style as the rest of the documentation. (#1532) - Added a notebook on using ~plasmapy.formulary.dimensionless.beta from the plasmapy.formulary module to calculate plasma β in different parts of the solar atmosphere. (#1552)
- Added an example notebook for the null point finder module. (#1554)
- Added an example notebook that calculates plasma parameters associated with the Magnetospheric Multiscale Mission (MMS). (#1568)
- Added an example notebook that discusses Coulomb collisions. (#1569)
- Increased the strictness of the
build_docs
environment so that broken links now emit warnings which are then treated as errors, fixed the new errors, removed thebuild_docs_nitpicky
environment, and updated the accordingly. (#1587) - Renamed the
magnetic_statics.ipynb
notebook tomagnetostatics.ipynb
, and made some minor edits to its text and plotting code. (#1588) - Added examples sections to the documentation pages for several modules within plasmapy.formulary. (#1590)
- Re-organized the directory structure for example notebooks. (#1590)
- Alphabetized the author list in
docs/about/credits.rst
, and added missing authors from usinggit log
and the pull request history. (#1599) - Renamed
docs/development
→docs/contributing
, and set up redirects from the original hyperlinks to the new ones for the contributor guide. (#1605) - Added _ as a extension to allow website redirects. (#1605)
- Added a
robots.txt
file to the online documentation to tell web crawlers to ignore all butstable
andlatest
documentation builds when indexing for search engines. (#1607)
- Streamlined ~plasmapy.utils.decorators.helpers.preserve_signature such that it only binds
__signature__
to the wrapped function, i.e. it no longer touches any other attribute of the wrapped function. (#1145) - Moved all tests associated with calculating the thermal speed from test file
plasmapy/formulary/tests/test_parameters.py
toplasmapy/formulary/tests/test_thermal_speed.py
. (#1145) - Applied substitutions for plasmapy.particles and in the narrative documentation. (#1158)
- Added csslint to the configuration to check the formatting and style of CSS files. (#1287)
- Added Python 3.10 to the GitHub Actions test suite. (#1292)
- Parametrized tests for
plasmapy.formulary.parameters.ion_sound_speed
. (#1313) - Added cron tests of the development versions of and , while changing the cadence of cron tests to be run approximately fortnightly. (#1333)
- Applied pytest.warns in several tests to catch warnings that are being issued during execution of the test suite. (#1345)
- Split the tests running on pull requests into multiple stages. The various pytest test environments, including code coverage, now run conditionally given successful execution of a basic test environment and the linter checks. This change also prevents code coverage prompts from appearing twice, with incomplete information on the first time. (#1350)
- Added a helper function that takes an iterable and creates a dict with physical types as keys and the corresponding objects from that iterable as values. This change updates the minimum required version of to 4.3.1. (#1360)
- Added the module
plasmapy.particles._factory
which contains a private function that accepts arguments that can be provided to , , or and returns the appropriate instance of one of those three classes. (#1365) - Used the extract method refactoring pattern on the initialization of objects. (#1366, #1368)
- Refactored tests in plasmapy.particles. (#1369)
- and no longer emit a warning when the charge and/or mass is not provided and got assigned a value of in the appropriate units. (#1399)
- Added unit test cases for manual entry of vector values in order to improve code coverage in the null point finder. (#1427)
- Consolidated and parametrized tests associated with
plasmapy.formulary.parameters.gyroradius
. (#1430) - Within plasmapy.particles modules, the
_elements
,_isotopes
,_parsing
, and_special_particles
modules are now imported directly. Before this, objects within these modules were typically imported. (#1440) - Renamed objects within the source code for plasmapy.particles to conform with
8
naming conventions (e.g.,ParticleZooClass
→ParticleZoo
,ParticleZoo
→particle_zoo
, andParticles
→particles
). (#1440) - Applied automated refactorings from Sourcery to plasmapy.utils. (#1463)
- Applied automated refactorings from Sourcery to plasmapy.plasma. (#1464)
- Bumped the minimum version of h5py to
3.0.0
. (#1465) - Changed the raised exception to ImportError (from a general Exception) when attempting to import plasmapy from a Python version below the minimum supported version. (#1465)
- Added a workflow to label pull requests based on size. (#1467, #1492)
- Separated
plasmapy.analysis.nullpoint.null_point_find
into two functions named ~plasmapy.analysis.nullpoint.null_point_find and plasmapy.analysis.nullpoint.uniform_null_point_find. ~plasmapy.analysis.nullpoint.null_point_find finds the null points of a vector space whose values are manually entered. plasmapy.analysis.nullpoint.uniform_null_point_find finds the null points of a uniform vector space whose values are generated by a function provided by the user. (#1477) - Applied automated refactorings from Sourcery to plasmapy.particles. (#1479)
- Applied automated refactorings from Sourcery to plasmapy.formulary. (#1480)
- Bumped the minimum versions of to
1.2.1
, numpy to1.19.0
, pandas to1.0.0
, pytest to5.4.0
, scipy to1.5.0
, and to0.15.0
. (#1482) - Moved , , , and out of the
extras
requirements category and into theinstall
requirements category. These packages are now installed when runningpip install plasmapy
. (#1482) - Added
dlint
,flake8
,flake8-absolute-import
,flake8-rst-docstrings
,flake8-use-fstring
, , andpygments
into thetests
requirements category and into theextras
requirements category. These dependencies are not required for basic installation with . (#1482) - Updated
docs/environment.yml
to use to install all requirements specified byrequirements.txt
when creating a Conda environment. (#1482) - Used codespell to fix typos. (#1493)
- Used contextlib.suppress to suppress exceptions, instead of
try
&except
blocks. (#1494) - Added a hook that transforms relative imports to absolute imports, except in
docs/plasmapy_sphinx
. (#1499) - Added a test that
import plasmapy
does not raise an exception. (#1501) - Added a GitHub Action for codespell, and updated the corresponding environment to print out contextual information. (#1530)
- Added
plasmapy/utils/units_definitions.py
to precompute units which were applied to optimize functionality inplasmapy/formulary/distribution.py
. (#1531) - Replaced
except Exception
clauses informulary
,particles
, andutils
with specific exception statements. (#1541) - Added tests for passing array valued
k
andtheta
arguments to~plasmapy.dispersion.numerical.hollweg_.hollweg
, which was an added feature in1529
. (#1549) - Added flake8-implicit-str-concat and flake8-mutable as extensions for
flake8
. (#1557) - Added flake8-simplify as an extension for
flake8
. (#1558) - Applied automated refactorings from Sourcery to plasmapy.dispersion. (#1562)
- Applied automated refactorings from Sourcery to plasmapy.diagnostics. (#1563)
- Applied automated refactorings from Sourcery to plasmapy.analysis. (#1564)
- Removed an extraneous print statement from ~plasmapy.formulary.collisions.frequencies.frequencies.collision_frequency that activated when the colliding particles were both electrons. (#1570)
- Changed the type hints for
z_mean
in plasmapy.formulary.collisions functions fromastropy.units.dimensionless_unscaled
to ~numbers.Real. Consequently,z_mean
will no longer be processed by ~plasmapy.utils.decorators.validators.validate_quantities. Previously,z_mean
issued a warning when a real number was provided instead of a dimensionless . (#1570) - Updated the version of black to 22.3.0 in PlasmaPy's configuration. This update included a formatting change where spaces around power operators were removed for sufficiently simple operands (e.g.,
a ** b
→a**b
). (#1582) - Renamed
units_definitions
to_units_definitions
andunits_helpers
to_units_helpers
in plasmapy.utils to mark these modules as private. (#1587) - Updated the
codemeta.json
file with metadata for the version0.8.1
release. (#1606)
- Removed alias
tfds_
toplasmapy.dispersion.two_fluid_dispersion.two_fluid_dispersion_solution
, with the reasoning behind the removal outlined in the pull request. (#1101) - Removed the
Tracker.synthetic_radiograph()
method and created the standalone function~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiograph
in its place. This new function takes either a ~plasmapy.diagnostics.charged_particle_radiography.Tracker object or a dictionary equivalent to ~plasmapy.diagnostics.charged_particle_radiography.Tracker.results_dict. (#1134) - Renamed subpackage
plasmapy.diagnostics.proton_radiography
to plasmapy.diagnostics.charged_particle_radiography, and renamed theSyntheticProtonRadiograph
class within that module to ~plasmapy.diagnostics.charged_particle_radiography.Tracker. (#1134) - ~plasmapy.diagnostics.charged_particle_radiography.Tracker no longer supports making changes to an instantiated object and re-running the simulation. Subsequent simulations should be performed by instantiating a new ~plasmapy.diagnostics.charged_particle_radiography.Tracker object and running its simulation. (#1134)
- For ~plasmapy.plasma.grids.CartesianGrid the ~plasmapy.plasma.grids.CartesianGrid.volume_averaged_interpolator now returns numpy.nan values for any interpolation not bounded by the grid points. (#1173)
- Renamed file
two_fluid_dispersion.py
totwo_fluid_.py
and moved it into the plasmapy.dispersion.analytical subpackage. The functiontwo_fluid_dispersion_solution()
contained within that file was renamed to ~plasmapy.dispersion.analytical.two_fluid_.two_fluid. (#1208) - Changed so that if it is provided with no arguments, then it creates an empty . This behavior is analogous to how list and tuple work. (#1223)
- Changed the behavior of in equality comparisons. Comparing a with an object that is not will now return False instead of raising a TypeError. (#1225)
- Changed the behavior of ~plasmapy.particles.particle_class.CustomParticle so that it returns False when compared for equality with another type. Previously, a TypeError was raised. (#1315)
- In plasmapy.particles, use of the term "integer charge" has been deprecated in favor of the term "charge number". The ~plasmapy.particles.particle_class.Particle.integer_charge attribute of has been deprecated in favor of ~plasmapy.particles.particle_class.Particle.charge_number. The ~plasmapy.particles.ionization_state.IonicLevel.integer_charge attribute of (formerly
IonicFraction
) has been deprecated in favor of ~plasmapy.particles.ionization_state.IonicLevel.charge_number. The ~plasmapy.particles.ionization_state.IonizationState.integer_charges attribute of has been deprecated in favor of ~plasmapy.particles.ionization_state.IonizationState.charge_numbers. (#1136) - The
particle
attribute of has been removed after having been deprecated in 0.6.0. (#1146) - Use more generalized keyword argument
T
instead ofT_i
inplasmapy.formulary.parameters.gyroradius
. TheT_i
argument has been deprecated and will be removed in a subsequent release. (#1210)
- Add the ~plasmapy.particles.ionization_state.IonizationState.average_ion method to . (#1028)
- Added the ~plasmapy.particles.ionization_state_collection.IonizationStateCollection.average_ion method to . (#1028)
- Added the
plasmapy.formulary.mathematics.Chandrasekhar_G
function, which is helpful in neoclassical transport theory. This change was reverted in #1233. (#1084) - Enabled slicing of instances to return a list of instances. (#1130)
- instances can now be compared to an of a different element without raising an exception. (#1130)
- Allowed len to be used on instances. (#1130)
- and now accept an additional, optional ion temperature argument for each of the ionic levels. (#1130)
- Added the
~plasmapy.diagnostics.charged_particle_radiography.Tracker.save_results
method to ~plasmapy.diagnostics.charged_particle_radiography.Tracker for saving results to the.npz
file format (see numpy.lib.format for details on the file format). (#1134) - Added the plasmapy.utils.decorators.deprecation module. The module includes ~plasmapy.utils.decorators.deprecation.deprecated, which is a decorator that is based on astropy.utils.decorators.deprecated. (#1136)
- Created the ~plasmapy.particles.ionization_state.IonizationState.to_list method of to provide a instance that contains the different ionic levels. (#1154)
- The behavior of the function
plasmapy.formulary.parameters.gyroradius
has been changed. If numpy.nan values are provided forT_i
orVperp
, then instead of raising a slightly misleading error, numpy.nan in the appropriate units is returned. (#1187) - Added the ~plasmapy.particles.particle_collections.ParticleList.average_particle method to . This method returns a particle with the mean mass and charge of the . The
use_rms_charge
anduse_rms_mass
keyword arguments make this method calculate the root mean square charge and mass, respectively. Theabundances
keyword argument allows the calculation of the mean or root mean square to be weighted. (#1204) - Restructured the plasmapy.dispersion subpackage by creating the ~plasmapy.dispersion.analytical subpackage to contain functionality related to analytical dispersion solutions. (#1208)
- Implemented
__eq__
,__ne__
and__hash__
to allow instances to be used as dict keys. (#1216) - Added the ~plasmapy.particles.particle_collections.ionic_levels function to create a initialized with different ionic levels of an element or isotope. (#1223)
- Made instances pickleable. (#1122)
- Fixed the behavior of
plasmapy.formulary.mathematics.Chandrasekhar_G
at very small and very large argument values. This change was reverted in #1233. (#1125) - Running ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiograph with the keyword
optical_density=True
will now return numpy.inf where the source profile intensity is zero. Previously, an incorrect value was returned since zero entries were replaced with values of1
before taking the logarithm. (#1134) - Fixed a bug in the volume-averaged interpolator for ~plasmapy.plasma.grids.CartesianGrid (~plasmapy.plasma.grids.CartesianGrid.volume_averaged_interpolator). The old method miss interpreted where the interpolation point was inside the nearest neighbor cell volume. So, if an interpolation point was at the lower bounds of the nearest neighbor cell volume, then the position was flipped and interpreted as being at the upper bounds of the cell volume, and visa-versa. (#1173)
- Fixed the normalization of the wavevector in the Thomson spectral density function,
~plasmapy.diagnostics.thomson.spectral_density
. The previous version was not properly normalizing the wavevector to unity. (#1190) - Reverted most of #1084 and #1125, removing our implementation of the Chandrasekhar G function (for now!). This function may get brought back at a later date, once we have an implementation we numerically trust. (#1233)
- Improved consistency of documentation style and made fixes in several subpackages. (#1073)
- Added a pre-release section to the release guide. This section now includes steps for having a feature freeze about a week before the release, followed by a code freeze about two days before the release. (#1081)
- Created the extension package plasmapy_sphinx and used it to replace
sphinx_automodapi
. plasmapy_sphinx creates directives :rstautomodapi
and :rstautomodsumm
to replace the same directives defined bysphinx_automodapi
. The documentation was updated so the slight syntax differences in the newly defined directives will still render the same as before. (#1105) - The term "integer charge" has been replaced in the documentation with the term "charge number". (#1136)
- Implemented a framework to define and use common Sphinx substitutions <https://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html #substitutions>__ across the narrative documentation and docstrings. These substitutions are defined in
docs/common_links.rst
. (#1147) - Began a project glossary at
docs/glossary.rst
. (#1149) - Changed the default branch name to
main
. Locations in the code and documentation that referred to the default branch of PlasmaPy (and certain other packages) were changed to reflect the new name (including, for example, in the development guide in the documentation). (#1150) - Updated information on how to write and build documentation in the development guide. (#1156)
- Updated information on how to write and run tests in the contributor guide. (#1163)
- Created an outline of a page in the development guide to describe the workflow required to contribute to PlasmaPy. (#1178)
- Added brief description about the physics of the upper-hybrid resonance to the docstring of the function
plasmapy.formulary.parameters.upper_hybrid_frequency
. (#1180) - Added a brief description about the physics of the lower-hybrid resonance to the docstring of the function
plasmapy.formulary.parameters.lower_hybrid_frequency
. (#1181) - Made the function
plasmapy.formulary.parameters.gyrofrequency
more general by removing the indications that it might only work for ions. (#1183) - Make plasmapy.analysis.fit_functions.AbstractFitFunction.FitParamTuple a property to fix the documentation build warning caused by the release of
v4.1.0
. (#1199) - Included a step in the release guide to update Binder requirements so that the release of PlasmaPy on gets installed when opening example notebooks from the stable and release branches of the online documentation. (#1205)
- Updated the documentation guide to include updates to environments for building the documentation. (#1206)
- Fixed numerous broken links in prior changelogs. (#1207)
- Improve the docstring for plasmapy.online_help. (#1213)
- Renamed "Development Guide" to "Contributor Guide", and temporarily removed the incomplete
docs/development/workflow.rst
from thetoctree
of the Contributor Guide. (#1217) - Fixed a typo in the docstring of
plasmapy.formulary.parameters.Alfven_speed
. (#1218) - Fixed broken links in docstrings for aliases in plasmapy.formulary. (#1238)
- Fixed multiple broken and redirected links. (#1257)
- Updated the documentation guide to include a description on how to add and cite references to PlasmaPy's global bibliography BibTeX file,
docs/bibliography.bib
. (#1263) - Added sphinxcontrib-bibtex as a extension to enable references to be stored in a BibTeX file. (#1263)
- Began a documentation-wide bibliography page. (#1263)
- Updated documentation guide to describe where formulae should go in docstrings and how to use glossary entries. (#1264)
- Updated and fixed hyperlinks in the documentation. (#1267)
- Adopted the
"xcode"
code highlighting style forpygments
to increase color contrast and improve web accessibility. (#1268) - Updated the feedback and communication page. (#1272)
- Updated the requirements for the documentation build to include no restrictions on
docutils
andsphinx_rtd_theme >= 1.0.0
.docutils == 0.17
is not compatible withsphinx_rtd_theme < 1.0
(see #1107 and #1230). (#1275) - Added a screenshot of the link for the preview of the documentation for a pull request. (#1298)
- Incorporated citations in the ~plasmapy.dispersion.analytical.two_fluid_.two_fluid docstring into the PlasmaPy bibliography framework. (#1301)
- Simplified handling of package dependencies. Removed duplicated requirements files and centralized them instead. Developer dependencies can now be installed with either
pip install plasmapy[developer]
orpip install -r requirements.txt
. (#789) - Reconfigured
flake8
settings in CI. (#1062) - Added to continuous integration (CI), to hopefully make writing prettier docstrings easier. (#1062)
- Added
flake8-rst-docstrings
to catch formatting errors in documentation in the linter stage of- (#1062)
- Added pytest-regressions to testing dependencies, to make regression tests a little easier to write. (#1084)
- Fixed a minor error in the E × B drift notebook. (#1088)
- Upgrade
nbqa
to latest available version (0.6.0). (#1104) - Moved our custom style testing suite to
pre-commit.ci
, taking advantage of the newpre-commit.ci autofix
command that allows manually calling for pre-commit to be run by typing that command as a comment to a pull request. (#1106) - Added tests using hypothesis. (#1125)
- Added to
setup.cfg
the configurationflake8.per-file-ignores=plasmapy/formulary/__init__.py:F403
to ignore warnings resulting from imports likefrom xx import *
. (#1127) - Re-enabled several
flake8
checks by removing the following codes from theflake8.extend-ignore
configuration insetup.cfg
:D100
,D102
,D103
,D104
,D200
,D210
,D301
,D401
,D407
,D409
,D412
,E712
,E713
,F403
,F541
,RST213
,RST306
, andRST902
. Addressed any failed linter checks from this modification. (#1127) - ~plasmapy.diagnostics.charged_particle_radiography.synthetic_radiograph now determines the default detector size to be the smallest detector plane centered on the origin that includes all particles. (#1134)
- Added ion velocity input to the
thomson.ipynb
diagnostics notebook. (#1171) - Added and removed pytest as extra requirements. (#1195)
- Updated test environments for building the documentation. Added the
build_docs_nitpicky
environment to check for broken links. (#1206) - Added the
--keep-going
flag to thebuild_docs*
environments with the-W
option so that test failures will not stop after the first warning (that is treated as an error). (#1206) - Make queries to plasmapy.online_help for
"quantity"
or"quantities"
redirect to the help page for astropy.units (which was already the case for"unit"
and"units"
). (#1213) - Bumped the version for builds from
3.7
to3.8
. (#1248) - Refactored
plasmapy/dispersion/tests/test_dispersion.py
to use hypothesis for property based testing. (#1249) - Defined redirects to allow and anchors to avoid checking when using to verify that hyperlinks are correct via
make linkcheck
. (#1267) - Replaced usage of eval inside with getattr. (#1280)
- Added using dlint to the
linters
testing environment intox.ini
as a static analysis tool to search for security issues. (#1280) - Enabled using flake8-use-fstring in the
linters
testing environment intox.ini
to enforce usage of formatted string literals (f-strings). (#1281) - Switched usage of str.format to formatted string literals (f-strings) in several files. (#1281)
- Added flake8-absolute-import to the
linters
environment. (#1283) - Removed unused imports, and changed several imports from relative to absolute. (#1283)
- Added hooks to auto-format
.ini
,.toml
, and.yaml
files, and applied changes from those hooks to existing files. (#1284) - Changed the validated units for the
theta
input argument of ~plasmapy.dispersion.analytical.two_fluid_.two_fluid from degrees to radians. (#1301) - Replaced usage of
distutils.version.StrictVersion
withpackaging.version.Version
becausedistutils
has been deprecated. As part of this change, packaging has been added as a dependency. (#1306) - Increased the minimum version of matplotlib to 3.3.0 and updated plasmapy.diagnostics.langmuir.swept_probe_analysis to be compatible with matplotlib 3.5.0. (#1334)
- The
State
namedtuple was changed to the ~plasmapy.particles.IonicFraction class. (Note: #1046 subsequently changed that to ~plasmapy.particles.IonicLevel). (#796) - Now, when the ~plasmapy.particles.IonizationState class is provided with an ion, the ionic fraction for that ion is set to 100% for the corresponding element or isotope. (#796)
AtomicError
was renamed to ~plasmapy.particles.exceptions.ParticleError andMissingAtomicDataError
was renamed to ~plasmapy.particles.exceptions.MissingParticleDataError. (#796)- In plasmapy.particles, the
IonizationStates
class was renamed to ~plasmapy.particles.IonizationStateCollection. Argumentn
ofIonizationStates
was changed ton0
in ~plasmapy.particles.IonizationStateCollection. (#796) - Moved and refactored error message formatting functionality from
plasmapy.utils.error_messages
to plasmapy.utils.code_repr. (#920) - Renamed the available "methods" for computing the Coulomb logarithm in an attempt to make the names more explicit. This is implemented using the
method
keyword for functions ~plasmapy.formulary.collisions.coulomb.Coulomb_logarithm and ~plasmapy.formulary.collisions.lengths.impact_parameter, and then propagated throughout the functionality in plasmapy.formulary.collisions. (#962) - Add dependency
pandas >= 1.0.0
. Modify dependency to bexarray >= 0.14.0
. (#963) - The ~plasmapy.plasma.grids.AbstractGrid property ~plasmapy.plasma.grids.AbstractGrid.grid is now dimensioned (has units) and cannot be accessed if all dimensions do not share the same units. (#981)
- Renamed attribute
is_uniform_grid
on ~plasmapy.plasma.grids.AbstractGrid tois_uniform
. (#981) - Drop Python 3.6 support. (#987)
- The
__getitem__
method of ~plasmapy.plasma.grids.AbstractGrid now returns a ~astropy.units.Quantity array instead of a reference to a xarray.DataArray. (#1027) - Renamed IonicFraction to ~plasmapy.particles.ionization_state.IonicLevel. This lays groundwork for future changes, where that class is going to become more than a fraction. (#1046)
- The
particle
attribute of ~plasmapy.particles.particle_class.Particle has been deprecated in favor of the newsymbol
attribute. Theparticle
attribute now issues a FutureWarning to indicate that it will be removed in a future release. (#984)
- Created the ~plasmapy.simulation.abstractions.AbstractNormalizations class to serve as an abstract interface for future classes that represent normalizations. (#859)
- Create the analysis sub-package plasmapy.analysis.swept_langmuir for analysis code related to analyzing swept Langmuir traces. Sub-package is initiated with functionality for calculating the floating potential, ~plasmapy.analysis.swept_langmuir.floating_potential.find_floating_potential. (#889)
- Added a proton radiography diagnostic module containing a tool for generating synthetic proton radiographs from simulated or calculated fields using a particle tracking algorithm. (#895)
- Created new grid objects for representing plasma quantities as functions of space. (#909)
- Added functions in plasmapy.utils.code_repr to reproduce strings that represent a call to a method or attribute of an object. These functions are used, for example, in error messages. (#920)
- Add the function
~plasmapy.dispersion.two_fluid_dispersion.two_fluid_dispersion_solution
to plasmapy.dispersion, which gives an analytical solution to the dispersion relation as derived by P. M. Bellan 2012 (DOI: 10.1029/2012JA017856). (#932) - Refactor out the ~plasmapy.simulation.particle_integrators.boris_push tracking integrator algorithm from
plasmapy.simulation.particletracker.ParticleTracker
. (#953) - For plasmapy.plasma.grids functionality, add better support for recognizing and handling physical quantities (e.g. spatial position, magnetic field, etc.) added to a grid object. (#963)
- For plasmapy.plasma.grids functionality, improve interpolation performance on non-uniform grids. (#963)
- Added the ~plasmapy.formulary.drifts.diamagnetic_drift function to ~plasmapy.formulary.drifts. (#966)
- Add properties ~plasmapy.plasma.grids.AbstractGrid.grid_resolution and ~plasmapy.plasma.grids.AbstractGrid.quantities to ~plasmapy.plasma.grids.AbstractGrid. (#981)
- Make several speed improvements to the functionality in ~plasmapy.plasma.grids, including the addition of keyword
persistent
to ~plasmapy.plasma.grids.AbstractGrid (and child class) methods ~plasmapy.plasma.grids.AbstractGrid.nearest_neighbor_interpolator and ~plasmapy.plasma.grids.AbstractGrid.volume_averaged_interpolator. This keyword allows the interpolators to assume the last grid setup and contents if input arguments have not changed. (#981) - Add methods ~plasmapy.plasma.grids.AbstractGrid.on_grid and ~plasmapy.plasma.grids.AbstractGrid.vector_intersects to ~plasmapy.plasma.grids.AbstractGrid. (#981)
- The ~plasmapy.particles.particle_class.Particle class now contains an attribute named
symbol
that is intended to replaceparticle
. Thesymbol
attribute has been added as a property to ~plasmapy.particles.particle_class.AbstractParticle, ~plasmapy.particles.particle_class.CustomParticle, and ~plasmapy.particles.particle_class.DimensionlessParticle. (#984) - Added new
can_be_zero
check parameter to ~plasmapy.utils.decorators.checks.CheckValues and its dependents ( ~plasmapy.utils.decorators.checks.check_values, ~plasmapy.utils.decorators.validators.ValidateQuantities, ~plasmapy.utils.decorators.validators.validate_quantities). (#999) - Both plasmapy.particles.CustomParticle and plasmapy.particles.DimensionlessParticle now allow users to define a custom symbol via the
symbol
keyword argument, which can then be accessed by thesymbol
attribute in each of these classes. (#1015) - The greater than (
>
) operator can now be used between ~plasmapy.particles.Particle and/or ~plasmapy.particles.ParticleList instances to get the nuclear reaction energy. (#1017) - Create plasmapy.particles.ParticleList as a list-like collection for instances of plasmapy.particles.Particle and plasmapy.particles.CustomParticle. Adding ~plasmapy.particles.Particle and/or ~plasmapy.particles.CustomParticle instances will now create a ~plasmapy.particles.ParticleList. (#1017)
- Added method ~plasmapy.plasma.grids.AbstractGrid.require_quantities to ~plasmapy.plasma.grids.AbstractGrid that verifies a list of quantities is present on the grid. Method is also incorporated into ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph. (#1027)
- Added the ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph.add_wire_mesh() method to ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph to allow the creation of synthetic proton radiographs that include a wire mesh reference grid. (#1049)
- Created a function, ~plasmapy.formulary.mathematics.rot_a_to_b, that calculates the rotation matrix that will rotate one 3D vector onto another. (#1054)
- Made ~plasmapy.plasma.grids.AbstractGrid.is_uniform a properly-documented public attribute of ~plasmapy.plasma.grids.AbstractGrid. (#1072)
- Fixed a minus sign bug in the Particle Tracker simulation that caused the E×B drift to go in the incorrect direction. (#953)
- Bugfix
plasmapy.analysis.fit_functions.Linear.root_solve
to handle the case where the slope is zero and no finite roots exist. (#959) - Fixed a bug that prevented nested iterations of a single ~plasmapy.particles.IonizationState or ~plasmapy.particles.IonizationStateCollection instance. (#1025)
- Fixed a bug in
grids.py
for non-uniform grids that arose when upgraded to v0.17.0 (#1027) - In ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph, adaptive
dt
now calculates the cyclotron period using the provided particle charge and mass (previously assumed protons). (#1035) - In ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph, the adaptive timestep algorithm now works when particles are provided using ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph.load_particles. (#1035)
- In ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph, removed highly deflected particles so the call of ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph.max_deflection does not raise an exception. (#1035)
- Add narrative documentation on ionization state functionality. (#796)
- Added description to
plasmapy.formulary.parameters.Hall_parameter
signature and equation in docstrings. (#934) - Updated documentation for the plasmapy.particles and plasmapy.utils subpackages. (#942)
- Improves documentation of plasmapy/formulary/quantum.py by cleaning up docstrings of contained functionality. (#951)
- Update all docstrings associated with computing the Coulomb logarithm and the possible methods of calculation. (#962)
- Add two Jupyter notebooks for functionality contained in `plasmapy.plasma.grids`: grids_cartesian.ipynb and grids_nonuniform.ipynb. (#963)
- Added the ExB drift notebook, which demonstrates the analytical solution for the drift and the implementation of the corresponding formulary drift functions, ~plasmapy.formulary.drifts.force_drift and ~plasmapy.formulary.drifts.ExB_drift. (#971)
- Describe what constitutes a valid representation of a particle in the docstring for the plasmapy.particles.particle_class.ParticleLike typing construct. (#985)
- Put the docstring for plasmapy.particles.Particle.is_category into numpydoc format. (#1039)
- Adds formulas (which were missing) to the docstrings of
plasmapy.formulary.dimensionless.quantum_theta
and ~plasmapy.formulary.dimensionless.beta. (#1041) - Add live rendering of changelog entries on documentation builds, based on sphinx-changelog. (#1052)
- Created an example notebook demonstrating how the ~plasmapy.diagnostics.proton_radiography.SyntheticProtonRadiograph class can be used to generate synthetic proton radiographs with arbitrary source profiles. Add code documentation links to all proton radiograph notebooks. (#1054)
- Update formatting and broken sphinx.ext.intersphinx links in plasmapy.formulary docstrings. (#1058)
- Make minor fixes in plasmapy.particles docstrings. (#1064)
- Organize the layout of the example Jupyter notebooks on the Read the Docs example page. (#1066)
- Fix formatting and broken sphinx.ext.intersphinx links in docstrings in various places in the code base. Improve installation instructions in the docs; the subpackage stability matrix, and funding acknowledgments. (#1076)
- Removed colorama as a dependency. (#920)
- Moved remaining CI from CircleCI to GitHub Actions. (#996)
- Add notebook CI through nbqa. (#997)
- Remove lambda expressions from plasmapy.particles and plasmapy.utils. (#1013)
- Add unicode particle aliases for electrons (
"β-"
,"β⁻"
), muons ("μ-"
,"μ⁻"
), anti-muons ("μ+"
,"μ⁺"
), tau particles ("τ"
,"τ-"
,"τ⁻"
), anti-tau particles ("τ+"
,"τ⁺"
) electron neutrinos ("ν_e"
), muon neutrinos ("ν_μ"
), tau neutrinos ("ν_τ"
), and alpha particles ("α"
). (#1036) - A set containing all valid particle categories may now be accessed via plasmapy.particles.Particle.is_category.valid_categories. (#1039)
- Properly handled warnings in test_proton_radiography.py (#1050)
- Created plasmapy.dispersion in accordance with PlasmaPy Enhancement Proposal 7 (PLEP 7) and migrated the dispersion functionality (
dispersionfunction.py
) from plasmapy.formulary to plasmapy.dispersion. (#910) - Removed default values for the ion and particle arguments of functions contained in
plasmapy.formulary.parameters
, in accordance with issue [#453](#453), and updated all relevant calls to modified functionality. (#911) - Moved test helper exceptions from
plasmapy.utils.pytest_helpers
toplasmapy.tests.helpers
. (#919) - Update
plasmapy.formulary.parameters.mass_density
so it calculates the mass density for a specific particle from a given number density. Original function calculated the total mass density (ion + electron). (#957)
- Added a function to calculate the power spectrum of thermal bremsstrahlung emitted by a Maxwellian plasma. (#892)
- Added support for multiple electron components to diagnostics.thomson.spectral_density. Also fixed a bug for multiple ion populations. (#893)
- Add dependency pygments >= 2.4.1. (#898)
- Create the plasmapy.analysis package as per PLEP-7 and initialize the package with the ~plasmapy.analysis.fit_functions module. Fit functions are designed to wrap together an analytical function, a curve fitter, uncertainty propagation, and a root solver to make curve fitting a little less painful. (#908)
- Created a new subpackage, plasmapy.tests.helpers, to contain test helper functionality. (#919)
- Create decorator ~plasmapy.utils.decorators.helpers.modify_docstring, which allows for programmatically prepending and/or appending a docstring. (#943)
- Allowed implicit conversions of AstroPy units in inputs and outputs of validated functions to happen without warnings. Most notably, this removes warnings on eV inputs to temperature fields. (#886)
- Update
plasmapy.formulary.parameters.Alfven_speed
to properly use the updatedplasmapy.formulary.parameters.mass_density
and maintain the same behavior. Also add handling of theion
input keyword, so and the convertible representations can be used as inputs. (#957)
- Improved the release guide after the release of 0.4.0. (#872)
- Add various improvements to the documentation.
- Replace home link with the plasmapy logo.
- Add module and index navigation links to sidebar header.
- Replace raw html on the main page that simulates a nbgallery with a real nbgallery directive.
- Move link to view page source code from the header to footer.
- Add link to footer the jumps the user back to the top of the page.
- Create and add custom CSS stylesheet.
- Create _templates directory and templates to customize page elements. (#875)
- Add static stub files to docs/api_static so all modules of plasmapy are indexed. This is necessary to expose all of plasmapy since not all modules are indexed in the narrative documentation. (#878)
- Decompose sub-package plasmapy/utils/roman/ into the plasmapy/utils/roman.py file. Move definition of roman specific Exceptions into plasmapy.utils.exceptions. (#883)
- Replaced references to Riot.im with references to Element.io or Matrix, as appropriate, following their recent rebranding. (#891)
- Update the information on how to cite PlasmaPy, including in the release guide. (#900)
- Apply isort to entire codebase, bringing it back to the pre-commit hook suite. (#857)
- Expand package metadata contained in
codemeta.json
, following the CodeMeta standard. (#902) - Changed remaining instances of @u.quantity_input to @validate_quantities in response to issue #880. (#905)
- Switched from Azure Pipelines to GitHub Actions for PR tests to make things easier for contributors. Moved away from Travis CI for test cron jobs. (#952)
- Rename
plasmapy.atomic
to ~plasmapy.particles. In ~plasmapy.formulary.collisions and ~plasmapy.formulary.braginskii, change arguments named particles tospecies
and arguments namedion_particle
toion
for multiple functions. (#742) - Officially delete
plasmapy.examples
. (#822) - Move
plasmapy.data
toplasmapy.particle.data
. (#823) - Renamed the plasmapy.classes subpackage to plasmapy.plasma. (#842)
- Added units to reprs of .formulary.magnetostatics classes. (#743)
- Create prototype abstract interfaces for plasma simulations (#753)
- Created classes to represent custom and dimensionless particles in
plasmapy.particles
. (#755) - Create
~plasmapy.formulary.relativity.relativistic_energy
function, which uses the established~plasmapy.formulary.relativity.Lorentz_factor
function to aid in the calculation of the relativistic energy of an object. (#805) - Create
~plasmapy.formulary.dimensionless.Reynolds_number
function. (#815) - Create
~plasmapy.formulary.dimensionless.Mag_Reynolds
function. (#820) - Create
plasmapy.formulary.parameters.Bohm_diffusion
function. (#830) - Added a new diagnostics module thomson containing a function spectral_density that calculates Thomson scattering spectra for Maxwellian plasmas in both the collective and non-collective regimes. As a followup to PR #835, set the minimal required Numpy version to 1.18.1 to finally fix unit dropping bugs. (#831)
- Revised parameters.thermal_speed to support 1D and 2D distributions as well as 3D, and added an example notebook for this function. (#850)
- Create plasmapy/formulary/ionization.py Create
~plasmapy.formulary.ionization.Z_bal
function. (#851) - Create
~plasmapy.formulary.ionization.Saha
function. (#860) Added aliases (with trailing underscores) for parameters in the formulary:
- plasmapy.formulary.dimensionless.Reynolds_number -> ~plasmapy.formulary.dimensionless.Re_
- plasmapy.formulary.dimensionless.Mag_Reynolds -> ~plasmapy.formulary.dimensionless.Rm_
- plasmapy.formulary.drifts.ExB_drift -> ~plasmapy.formulary.drifts.veb_
- plasmapy.formulary.drifts.force_drift -> ~plasmapy.formulary.drifts.vfd_
plasmapy.formulary.parameters.mass_density
->plasmapy.formulary.parameters.rho_
plasmapy.formulary.parameters.Afven_speed
->plasmapy.formulary.parameters.va_
plasmapy.formulary.parameters.ion_sound_speed
->plasmapy.formulary.parameters.cs_
plasmapy.formulary.parameters.thermal_speed
->plasmapy.formulary.parameters.vth_
plasmapy.formulary.parameters.thermal_pressure
->plasmapy.formulary.parameters.pth_
plasmapy.formulary.parameters.kappa_thermal_speed
->plasmapy.formulary.parameters.vth_kappa_
plasmapy.formulary.parameters.inertial_length
->plasmapy.formulary.parameters.cwp_
plasmapy.formulary.parameters.Hall_parameter
->plasmapy.formulary.parameters.betaH_
plasmapy.formulary.parameters.gyrofrequency
->plasmapy.formulary.parameters.oc_
,plasmapy.formulary.parameters.wc_
plasmapy.formulary.parameters.gyroradius
->plasmapy.formulary.parameters.rc_
,plasmapy.formulary.parameters.rhoc_
plasmapy.formulary.parameters.plasma_frequency
->plasmapy.formulary.parameters.wp_
plasmapy.formulary.parameters.Debye_length
->plasmapy.formulary.parameters.lambdaD_
plasmapy.formulary.parameters.Debye_number
->plasmapy.formulary.parameters.nD_
plasmapy.formulary.parameters.magnetic_pressure
->plasmapy.formulary.parameters.pmag_
plasmapy.formulary.parameters.magnetic_energy_density
->plasmapy.formulary.parameters.ub_
plasmapy.formulary.parameters.upper_hybrid_frequency
->plasmapy.formulary.parameters.wuh_
plasmapy.formulary.parameters.lower_hybrid_frequency
->plasmapy.formulary.parameters.wlh_
plasmapy.formulary.parameters.Bohm_diffusion
->plasmapy.formulary.parameters.DB_
- plasmapy.formulary.quantum.deBroglie_wavelength -> ~plasmapy.formulary.quantum.lambdaDB_
- plasmapy.formulary.quantum.thermal_deBroglie_wavelength -> ~plasmapy.formulary.quantum.lambdaDB_th_
- plasmapy.formulary.quantum.Fermi_energy -> ~plasmapy.formulary.quantum.Ef_ (#865)
- Add json_dumps method to ~plasmapy.particles.particle_class.AbstractParticle to convert a particle object into a JSON string. Add json_dump method to ~plasmapy.particles.particle_class.AbstractParticle to serialize a particle object and writes it to a file. Add JSON decoder ~plasmapy.particles.serialization.ParticleJSONDecoder to deserialize JSON objects into particle objects. Add plasmapy.particles.serialization.json_loads_particle function to convert JSON strings to particle objects (using ~plasmapy.particles.serialization.ParticleJSONDecoder). Add plasmapy.particles.json_load_particle function to deserialize a JSON file into a particle object (using ~plasmapy.particles.serialization.ParticleJSONDecoder). (#836)
- Fix incorrect use of pkg.resources when defining plasmapy.__version__. Add setuptools to package dependencies. Add a definition of __version__ for developers using source files. (#774)
- Repair notebook links that are defined in the nbsphinx_prolog sphinx configuration variable. (#828)
- Increase the required Astropy version from 3.1 to 4.0, Numpy from 1.14 to 1.16.6, Scipy from 0.19 to 1.2 and lmfit from 0.9.7 to 1.0.1. This fixes long-standing issues with Numpy operations dropping units from AstroPy quantities. (#835)
- Added documentation to file test_converters (#756)
- Updated installation instructions. (#772)
- Reorder documentation page (#777)
- Fix failing documentation build due to duplicate docstrings for ParticleTracker.kinetic_energy_history and incompatibility of sphinx-automodapi with sphinx v3.0.0. (#780)
- Automate definition of documentation release and version in docs/conf.py with plasmapy.__version__. (#781)
- Add a docstring to
__init__.py
in plasmapy.formulary. (#788) - Replaced sphinx-gallery with nbsphinx, turning .py example files into .ipynb files and allowing for easier example submission. (#792)
- Linked various instances of classes and functions in the .ipynb examples in docs/notebooks/ to the respective API docs. (#825)
- Fixed a few documentation formatting errors. (#827)
- Add notes on the PlasmaPy benchmarks repository to documentation. (#841)
- Improve readability of the plasmapy.formulary page by replacing the toctree list with a cleaner reStructuredText table. (#867)
- Remove mutable arguments from Particle.is_category method. (#751)
- Remove all occurrences of default mutable arguments (#754)
- Handle ModuleNotFoundError when trying to import __version__ but setuptools_scm has not generated the version.py file. This commonly happens during development when plasmapy is not installed in the python environment. (#763)
- Updated pep8speaks/flake8 configuration and added .pre-commit-config.yaml to simplify automated style checks during development. (#770)
- Removes some lint from setup.py and setup.cfg. Use pkg_resources for version checking in code. Remove version.py file in favor of pkg_resources. (#771)
- Default settings for isort were set to be consistent with default settings for black. (#773)
- Update community meeting and funding information in docs. (#784)
- Improved pull request template to include more information about changelog entries. (#843)
- Added GitHub actions that apply pre-commit and flake8 (separately) to incoming pull requests. (#845)
- Apply pre-commit hooks to entire repository, so that GitHub actions do not shout at contributors needlessly. (#846)
- Update
~plasmapy.particles.particle_class.CustomParticle
so input parameters mass and charge can accept string representations of astropy Quantities. (#862)
- Create simulation subpackage; move Species particle tracker there; rename to particletracker (#665)
- Changed plasmapy.classes.Species to plasmapy.simulation.ParticleTracker (#668)
- Move pytest helper functionality from plasmapy.utils to
plasmapy.utils.pytest_helpers
(#674) - Move plasmapy.physics, plasmapy.mathematics and plasmapy.transport into the common plasmapy.formulary subpackage (#692)
- Change ClassicalTransport methods into attributes (#705)
- Remove parameters_cython.pyx, switching to Numba for the future of computationally intensive code in PlasmaPy (#650)
- Remove plasmapy.constants, which was a thin wrapper around astropy.constants with no added value (#651)
- Generalize ion_sound_speed function to work for all values of k2λD2 (i.e. not just in the non-dispersive limit). (#700)
- Optimize add__magnetostatics for a 16x speedup in tests! (#703)
- Define preserve_signature decorator to help IDEs parse signatures of decorated functions. (#640)
- Fix Pytest deprecations of message argument to raise and warn functions. (#666)
- Fix h5py warning in OpenPMD module, opening files in read mode by default (#717)
- Added real-world examples to examples/plot_physics.py and adjusted the plots to be more human-friendly. (#448)
- Add examples images to the top of the main doc page in docsindex.rst (#655)
- Added exampes to the documentation to mass_density
and Hall_parameter functions (#709)
- Add docstrings to decorator
plasmapy.utils.decorators.converter.angular_freq_to_hz
. (#729)
- Replace decorator
plasmapy.utils.decorators.checks.check_quantity
with decoratorplasmapy.utils.decorators.validators.validate_quantities
. Permanently delete decorator~plasmapy.utils.decorators.checks.check_quantity
and its supporting code. For functionsplasmapy.formulary.quantum.chemical_potential
andplasmapy.formulary.quantum._chemical_potential_interp
, add a RaiseNotImplementedError due to bug outlined in issue #726. Associated pytests are marked with pytest.mark.xfails and doctests are marked with doctests: +SKIP. (#722) - Add Towncrier automated changelog creation support (#643)
- Move existing "check" decorators to new
plasmapy.utils.decorators
module (#647) - Allow running our sphinx-gallery examples as Jupyter notebooks via Binder (#656)
- Overhaul CI setup, following the example of SunPy (#657)
- Patch sphinx_gallery.binder to output custom links to Binder instance (#658)
- Remove the now unnecessary astropy_helpers submodule (#663)
- Followup PR to CI overhaul (#664)
- Add a Codemeta file (
codemeta.json
) (#676) - Overhaul and simplify CI, add Python 3.8 to tests, bump minimal required package versions, fix docs. (#712)
- Update communication channels in docs (#715)
- Code style fixes to the atomic subpackage (#716)
- Clean up main package namespace, removing plasmapy.test (#718)
- Reduce precision of tests and doctests to allow for refinements of fundamental constants. (#731)
- Create decorators for checking/validating values and units of function/method input and return arguments. Defined decorators include
~plasmapy.utils.decorators.checks.check_values
,~plasmapy.utils.decorators.checks.check_units
, and~plasmapy.utils.decorators.validators.validate_quantities
. These decorators are fully defined by "decorator classes"~plasmapy.utils.decorators.checks.CheckBase
,~plasmapy.utils.decorators.checks.CheckValues
,~plasmapy.utils.decorators.checks.CheckUnits
, and~plasmapy.utils.decorators.validators.ValidateQuantities
. (#648) - Create a decorator to change output of physics functions from "radians/s" to "hz" (#667)
- Added pytest.mark.slow to pytest markers. Updated documentation to notify developers of functionality. (#677)