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setup.py
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setup.py
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#! /usr/bin/env python3
import os
from setuptools import setup, find_packages
VERSION = "0.1.0"
HERE = os.path.abspath(os.path.dirname(__file__))
def get_description():
README = os.path.join(HERE, 'README.md')
with open(README, 'r') as f:
return f.read()
setup(name="maxatac",
description="Neural networks for predicting TF binding using ATAC-seq",
long_description=get_description(),
long_description_content_type="text/markdown",
version=VERSION,
url="",
download_url="https://github.com/dlab-arp/maxatac_V2.git",
author="",
author_email="",
license="Apache-2.0",
include_package_data=True,
packages=find_packages(),
install_requires=["tensorflow_gpu==1.15.2",
"tensorboard",
"keras==2.3.1",
"py2bit==0.3.0",
"numpy>=1.9",
"pyBigWig==0.3.17",
"pydot==1.4.1",
"matplotlib",
"scikit-learn==0.19",
"pysam==0.15.3",
"pybedtools==0.8.1",
"pandas==1.1.5",
"pyfiglet",
"tqdm",
"grpcio==1.35.0",
"deeplift",
"seaborn",
"shap @ git+https://github.com/AvantiShri/shap.git@master#egg=shap",
"modisco @ git+https://github.com/XiaotingChen/tfmodisco.git@0.5.9.2#egg-modisco"
],
zip_safe=False,
scripts=["maxatac/bin/maxatac"],
classifiers=[]
)