specificity.py

# Copyright The PyTorch Lightning team.
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from typing import Any, Dict, Optional

import torch
from torch import Tensor

from torchmetrics.classification.stat_scores import StatScores
from torchmetrics.functional.classification.specificity import _specificity_compute
from torchmetrics.utilities.enums import AverageMethod


class Specificity(StatScores):
    r"""Computes `Specificity`_:

    .. math:: \text{Specificity} = \frac{\text{TN}}{\text{TN} + \text{FP}}

    Where :math:`\text{TN}` and :math:`\text{FP}` represent the number of true negatives and
    false positives respecitively. With the use of ``top_k`` parameter, this metric can
    generalize to Specificity@K.

    The reduction method (how the specificity scores are aggregated) is controlled by the
    ``average`` parameter, and additionally by the ``mdmc_average`` parameter in the
    multi-dimensional multi-class case. Accepts all inputs listed in :ref:`pages/classification:input types`.

    Args:
        num_classes:
            Number of classes. Necessary for ``'macro'``, ``'weighted'`` and ``None`` average methods.
        threshold:
            Threshold probability value for transforming probability predictions to binary
            (0,1) predictions, in the case of binary or multi-label inputs.
        average:
            Defines the reduction that is applied. Should be one of the following:

            - ``'micro'`` [default]: Calculate the metric globally, across all samples and classes.
            - ``'macro'``: Calculate the metric for each class separately, and average the
              metrics across classes (with equal weights for each class).
            - ``'weighted'``: Calculate the metric for each class separately, and average the
              metrics across classes, weighting each class by its support (``tn + fp``).
            - ``'none'`` or ``None``: Calculate the metric for each class separately, and return
              the metric for every class.
            - ``'samples'``: Calculate the metric for each sample, and average the metrics
              across samples (with equal weights for each sample).

            .. note:: What is considered a sample in the multi-dimensional multi-class case
                depends on the value of ``mdmc_average``.

        mdmc_average:
            Defines how averaging is done for multi-dimensional multi-class inputs (on top of the
            ``average`` parameter). Should be one of the following:

            - ``None`` [default]: Should be left unchanged if your data is not multi-dimensional
              multi-class.

            - ``'samplewise'``: In this case, the statistics are computed separately for each
              sample on the ``N`` axis, and then averaged over samples.
              The computation for each sample is done by treating the flattened extra axes ``...``
              (see :ref:`pages/classification:input types`) as the ``N`` dimension within the sample,
              and computing the metric for the sample based on that.

            - ``'global'``: In this case the ``N`` and ``...`` dimensions of the inputs
              (see :ref:`pages/classification:input types`)
              are flattened into a new ``N_X`` sample axis, i.e. the inputs are treated as if they
              were ``(N_X, C)``. From here on the ``average`` parameter applies as usual.

        ignore_index:
            Integer specifying a target class to ignore. If given, this class index does not contribute
            to the returned score, regardless of reduction method. If an index is ignored, and ``average=None``
            or ``'none'``, the score for the ignored class will be returned as ``nan``.

        top_k:
            Number of the highest probability entries for each sample to convert to 1s - relevant
            only for inputs with probability predictions. If this parameter is set for multi-label
            inputs, it will take precedence over ``threshold``. For (multi-dim) multi-class inputs,
            this parameter defaults to 1.

            Should be left unset (``None``) for inputs with label predictions.

        multiclass:
            Used only in certain special cases, where you want to treat inputs as a different type
            than what they appear to be. See the parameter's
            :ref:`documentation section <pages/classification:using the multiclass parameter>`
            for a more detailed explanation and examples.

        kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.

    Raises:
        ValueError:
            If ``average`` is none of ``"micro"``, ``"macro"``, ``"weighted"``, ``"samples"``, ``"none"``, ``None``.

    Example:
        >>> from torchmetrics import Specificity
        >>> preds  = torch.tensor([2, 0, 2, 1])
        >>> target = torch.tensor([1, 1, 2, 0])
        >>> specificity = Specificity(average='macro', num_classes=3)
        >>> specificity(preds, target)
        tensor(0.6111)
        >>> specificity = Specificity(average='micro')
        >>> specificity(preds, target)
        tensor(0.6250)

    """
    is_differentiable: bool = False
    higher_is_better: bool = True
    full_state_update: bool = False

    def __init__(
        self,
        num_classes: Optional[int] = None,
        threshold: float = 0.5,
        average: str = "micro",
        mdmc_average: Optional[str] = None,
        ignore_index: Optional[int] = None,
        top_k: Optional[int] = None,
        multiclass: Optional[bool] = None,
        **kwargs: Dict[str, Any],
    ) -> None:
        allowed_average = ["micro", "macro", "weighted", "samples", "none", None]
        if average not in allowed_average:
            raise ValueError(f"The `average` has to be one of {allowed_average}, got {average}.")

        if "reduce" not in kwargs or kwargs["reduce"] is None:
            kwargs["reduce"] = "macro" if average in [AverageMethod.WEIGHTED, AverageMethod.NONE, "none"] else average
        if "mdmc_reduce" not in kwargs or kwargs["mdmc_reduce"] is None:
            kwargs["mdmc_reduce"] = mdmc_average

        super().__init__(
            threshold=threshold,
            top_k=top_k,
            num_classes=num_classes,
            multiclass=multiclass,
            ignore_index=ignore_index,
            **kwargs,
        )

        self.average = average

    def compute(self) -> Tensor:
        """Computes the specificity score based on inputs passed in to ``update`` previously.

        Return:
            The shape of the returned tensor depends on the ``average`` parameter:

            - If ``average in ['micro', 'macro', 'weighted', 'samples']``, a one-element tensor will be returned
            - If ``average in ['none', None]``, the shape will be ``(C,)``, where ``C`` stands  for the number
              of classes
        """
        tp, fp, tn, fn = self._get_final_stats()
        return _specificity_compute(tp, fp, tn, fn, self.average, self.mdmc_reduce)