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azure-pipelines.yml
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trigger:
batch: true
branches:
include:
- master
jobs:
- job: 'WindowsBuild'
displayName: "End-to-end Windows build & package"
timeoutInMinutes: 0
cancelTimeoutInMinutes: 300
pool:
vmImage: 'vs2017-win2016'
steps:
- checkout: self # self represents the repo where the initial Pipelines YAML file was found
# fetchDepth: 1 # the depth of commits to ask Git to fetch; defaults to no limit
# submodule
- bash: |
git submodule update --init --recursive
# ls -lt
# ls ./src/applications/Preprocessing/greedy
displayName: 'Git Submodule Init and Update'
- task: CacheBeta@0
inputs:
key: '"bin_windows_20191213.tar.gz" | "$(Build.DefinitionName)"'
path: $(Build.SourcesDirectory)
cacheHitVar: CACHE_RESTORED_WINDOWS
restoreKeys: |
"bin_windows_20191213.tar.gz"
continueOnError : true
displayName: 'Caching'
- script: |
choco install doxygen.install nsis.install wget
displayName: 'Install dependencies'
# # Pull LFS
# - bash: |
# export GIT_LFS_SKIP_SMUDGE=1
# # git lfs pull --include "binaries/precompiledApps/windows.zip"
# # git lfs pull --include "binaries/qt_5.12.1/windows.zip"
# #echo "Not doing this until quota is improved on GitHub"
# displayName: 'Pull LFS'
# condition: ne(variables.CACHE_RESTORED_WINDOWS, 'true')
# - powershell: |
# wmic logicaldisk get size,freespace,caption
# displayName: 'Disk space check'
- bash: |
tar xvfz bin_windows_20191213.tar.gz
rm -rf bin_windows_20191213.tar.gz
# ls
mv bin_windows bin
# ls
cd bin
tar xvfz qt.tar.gz
tar xvfz externalApps.tar.gz
rm -rf *.tar.gz
# rm CMakeCache.txt
ls -lt
displayName: 'Unzip bin if cached'
condition: eq(variables.CACHE_RESTORED_WINDOWS, 'true')
- powershell: |
wget https://github.com/CBICA/CaPTk/raw/master/binaries/precompiledApps/windows.zip -O binaries_windows.zip
wget https://github.com/CBICA/CaPTk/raw/master/binaries/qt_5.12.1/windows.zip -O qt.zip
displayName: 'Downloading via wget'
condition: ne(variables.CACHE_RESTORED_WINDOWS, 'true')
# Moving LFS Files
- bash: |
mkdir -p bin
cd bin
mv ../binaries_windows.zip .
mv ../qt.zip .
# wget https://github.com/CBICA/CaPTk/raw/master/binaries/precompiledApps/windows.zip -O binaries_windows.zip
# wget https://github.com/CBICA/CaPTk/raw/master/binaries/qt_5.12.1/windows.zip -O qt.zip
rm -rf ../binaries/*
rm -rf ../data/georgetown
rm -rf ../data/georgetown
rm -rf ../docs
rm -rf ../.git
ls -lt
displayName: 'Moving LFS files to the appropriate location under bin and freeing up some space'
condition: ne(variables.CACHE_RESTORED_WINDOWS, 'true')
- script: |
cd bin
call "C:\Program Files (x86)\Microsoft Visual Studio\2017\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64
cmake -G "Visual Studio 15 2017 Win64" -DCMAKE_INSTALL_PREFIX="./installLibs" -DCMAKE_CONFIGURATION_TYPES="Release" ..
# freeing up space
rm -rf ../src/applications/individualApps/libra_source/doc
rm -rf ../src/applications/individualApps/libra_source/LIBRA_Software_Manual.pdf
# freeing up space
setx PATH "%PATH%;$(Build.SourcesDirectory)/bin/qt/5.12.1/bin"
cmake --build . --target ALL_BUILD --config Release
rm -rf installLibs
rm -rf qt.zip
rm -rf binaries_windows.zip
displayName: 'Configure and compile Superbuild'
condition: ne(variables.CACHE_RESTORED_WINDOWS, 'true')
- bash: |
git pull origin master
git log -1
cat CMakeLists.txt | grep -i "PROJECT_VERSION"
displayName: 'Testing git pull and version'
# - powershell: |
# wmic logicaldisk get size,freespace,caption
# displayName: 'Disk space check'
- script: |
cd bin
call "C:\Program Files (x86)\Microsoft Visual Studio\2017\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64
cmake -G "Visual Studio 15 2017 Win64" -DCMAKE_INSTALL_PREFIX="./install" -DCMAKE_CONFIGURATION_TYPES="Release" -DCAPTK_DISABLE_CWL=ON -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=OFF ..
setx PATH "%PATH%;$(Build.SourcesDirectory)/bin/qt/5.12.1/bin"
setx CMAKE_PREFIX_PATH "%CMAKE_PREFIX_PATH%;$(Build.SourcesDirectory)/bin/ITK-build;$(Build.SourcesDirectory)/bin/DCMTK-build;$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5"
cmake --build . --target ALL_BUILD --config Release
rm -rf externalApps
displayName: 'Configure and compile CaPTk'
- powershell: |
get-psdrive | Where Free*
cd bin
# Remove-Item install_manifest.txt
pwd
switch((ls -r|measure -s Length).Sum) {
{$_ -gt 1GB} {
'{0:0.0} GiB' -f ($_/1GB)
break
}
{$_ -gt 1MB} {
'{0:0.0} MiB' -f ($_/1MB)
break
}
{$_ -gt 1KB} {
'{0:0.0} KiB' -f ($_/1KB)
break
}
default { "$_ bytes" }
}
displayName: 'Disk space check'
- script: |
cd bin
export GIT_LFS_SKIP_SMUDGE=1
git lfs pull --include "data/TestData.zip"
call "C:\Program Files (x86)\Microsoft Visual Studio\2017\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64
cmake -G "Visual Studio 15 2017 Win64" -DCMAKE_INSTALL_PREFIX="./install" -DCMAKE_CONFIGURATION_TYPES="Release" -DCAPTK_DISABLE_CWL=ON -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=ON ..
setx PATH "%PATH%;$(Build.SourcesDirectory)/bin/qt/5.12.1/bin"
cmake --build . --target RUN_TESTS --config Release
rm -rf testing
displayName: 'Performing the Tests'
- script: |
cd bin
call "C:\Program Files (x86)\Microsoft Visual Studio\2017\Enterprise\VC\Auxiliary\Build\vcvarsall.bat" x64
cmake -G "Visual Studio 15 2017 Win64" -DCMAKE_INSTALL_PREFIX="./install" -DCMAKE_CONFIGURATION_TYPES="Release" -DCAPTK_DISABLE_CWL=ON -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=OFF ..
rm -rf binaries_windows.zip
rm -rf install_manifest.txt
setx PATH "%PATH%;$(Build.SourcesDirectory)/bin/qt/5.12.1/bin"
setx CMAKE_PREFIX_PATH "%CMAKE_PREFIX_PATH%;$(Build.SourcesDirectory)/bin/ITK-build;$(Build.SourcesDirectory)/bin/DCMTK-build;$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5"
cmake --build . --target PACKAGE --config Release
ls -lt *_Installer.*
mv *_Installer.* $(Build.ArtifactStagingDirectory)
cd ../
displayName: 'Build & Package CaPTk'
- bash: |
rm -rf src
rm -rf docs*
rm -rf data
rm -rf binaries
rm -rf scripts
rm -rf bin_windows_20191213.tar.gz
rm -rf install_manifest.txt
rm -rf CMakeLists.txt
cd bin
rm -rf *proj*
tar cvfz externalApps.tar.gz externalApps
tar cvfz qt.tar.gz qt
rm -rf qt
rm -rf externalApps
rm -rf _CPack*
rm -rf CMakeCache.txt
# cmake -UPROJECT_VERSION # delete the project version definition
cd ../
mv bin bin_windows
tar cvfz bin_windows_20191213.tar.gz bin_windows
rm -rf bin_windows
displayName: 'Zipping bin'
- powershell: |
get-psdrive | Where Free*
cd $(Build.ArtifactStagingDirectory)
pwd
displayName: 'Disk space check'
- task: PublishBuildArtifacts@1
inputs:
pathtoPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: '$(Build.DefinitionName)_installer_Windows'
- task: DownloadBuildArtifacts@0
inputs:
buildType: 'current'
downloadType: 'single'
artifactName: '$(Build.DefinitionName)_installer_Windows'
downloadPath: '$(System.ArtifactsDirectory)'
- task: CopyFilesOverSSH@0
inputs:
sshEndpoint: cbicaNITRC
sourceFolder: $(Build.ArtifactStagingDirectory)
contents: '*_Installer.*'
targetFolder: /mnt/gforge-data/gforge/home/groups/captk/downloads
cleanTargetFolder: false
overwrite: true
continueOnError: true
displayName: Uploading to NITRC
condition: eq(variables['Build.DefinitionName'], 'CBICA.CaPTk')
- job: 'XenialBuild'
displayName: "End-to-end Linux (Xenial) build"
timeoutInMinutes: 0
cancelTimeoutInMinutes: 300
pool:
vmImage: 'Ubuntu-16.04'
steps:
- checkout: self # self represents the repo where the initial Pipelines YAML file was found
#fetchDepth: 1 # the depth of commits to ask Git to fetch; defaults to no limit
# submodule
- bash: |
git submodule update --init --recursive
# ls -lt
# ls ./src/applications/Preprocessing/greedy
displayName: 'Git Submodule Init and Update'
- bash: |
df -k .
displayName: 'Disk space check'
- task: CacheBeta@0
inputs:
key: '"bin_linux_20191213.tar.gz" | "$(Build.DefinitionName)"'
path: $(Build.SourcesDirectory)
cacheHitVar: CACHE_RESTORED_LINUX
continueOnError : true
restoreKeys: |
"bin_linux_20191213.tar.gz"
displayName: 'Caching'
# Dependency manager
- bash: |
#sudo apt-get update && sudo apt-get dist-upgrade -y
sudo apt-get update && sudo apt-get install -qq gcc-4.8 g++-4.8 make libgl-dev cmake python3-pip python-numpy dos2unix libxkbcommon-x11-0 libgstreamer-plugins-base0.10-0 libgstreamer-plugins-base1.0-dev libpulse-mainloop-glib0 libmysqlclient-dev libmysqlclient20
echo "Installing MPI stuff"
sudo apt-get install mpich libopenmpi-dev
echo "Installing OpenGL stuff"
sudo apt-get install mesa-common-dev libglu1-mesa-dev libgl1-mesa-dev freeglut3-dev
sudo apt-get install doxygen
export GIT_LFS_SKIP_SMUDGE=1
displayName: 'Install dependencies from Aptitude'
# # Pull LFS
# - bash: |
# curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | sudo bash
# sudo apt-get install git-lfs
# git lfs install
# export GIT_LFS_SKIP_SMUDGE=1
# git lfs pull --include "binaries/precompiledApps/linux.zip"
# git lfs pull --include "binaries/qt_5.12.1/linux.zip"
# #echo "Not doing this until quota is improved on GitHub"
# displayName: 'Pull LFS'
# condition: ne(variables.CACHE_RESTORED_LINUX, 'true')
- bash: |
tar xvfz bin_linux_20191213.tar.gz
rm -rf bin_linux_20191213.tar.gz
# ls
mv bin_linux bin
# ls
cd bin
tar xvfz qt.tar.gz
tar xvfz externalApps.tar.gz
rm -rf *.tar.gz
mv binaries_linux externalApps
# rm CMakeCache.txt
ls -lt
displayName: 'Unzip bin if cached'
condition: eq(variables.CACHE_RESTORED_LINUX, 'true')
# Moving LFS Files
- bash: |
mkdir -p bin
cd bin
wget https://github.com/CBICA/CaPTk/raw/master/binaries/precompiledApps/linux.zip -O binaries_linux.zip
wget https://github.com/CBICA/CaPTk/raw/master/binaries/qt_5.12.1/linux.zip -O qt.zip
# mv ../binaries/precompiledApps/linux.zip ./binaries_linux.zip
# mv ../binaries/qt_5.12.1/linux.zip ./qt.zip
ls -lt
displayName: 'Downloading & Moving LFS files to the appropriate location under bin'
condition: ne(variables.CACHE_RESTORED_LINUX, 'true')
# Configure and build superbuild
- bash: |
cd bin
cmake -DCMAKE_INSTALL_PREFIX="./install/appdir/usr" ..
make -j2
displayName: 'Configure and compile Superbuild'
condition: ne(variables.CACHE_RESTORED_LINUX, 'true')
# - bash: |
# tar cvfz bin_linux_20191213.tar.gz bin
# displayName: 'Zipping Superbuild'
- bash: |
df -k .
displayName: 'Disk space check'
# Check qt
- bash: |
cd bin
ls -a
ls ./qt/
displayName: 'Check qt'
- bash: |
git pull origin master
git log -1
cat CMakeLists.txt | grep -i "PROJECT_VERSION"
displayName: 'Testing git pull and version'
# Configure and build CaPTk
- bash: |
cd bin
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
cmake -DCMAKE_INSTALL_PREFIX="./install/appdir/usr" -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=ON ..
make -j2
displayName: 'Configure and compile CaPTk with Testing enabled'
- script: |
cd bin
make test
rm -rf testing
displayName: 'Performing the Tests'
# Configure and build CaPTk
- bash: |
cd bin
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
cmake -DCMAKE_INSTALL_PREFIX="./install/appdir/usr" -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=OFF ..
make -j2
make install/strip
displayName: 'Configure and compile CaPTk'
# Check libra
- bash: |
cd bin/install/appdir/usr/bin/
ls -l
displayName: 'Checking ${installDir}/bin'
- bash: |
wget http://files.directadmin.com/services/debian_7.0_64/libmysqlclient.so.18
sudo cp -fv libmysqlclient.so.18 /usr/lib/x86_64-linux-gnu/
cd /usr/lib/x86_64-linux-gnu
sudo chmod 755 libmysqlclient.so.18
sudo ldconfig
displayName: 'SQL lib fix for PKG_COPY_QT_LIBS'
# Build a package
- bash: |
export PATH=`pwd`/bin/qt/5.12.1/bin:`pwd`/bin/qt/5.12.1/libexec:$PATH
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
rm -rf regression
rm -rf binaries
export PKG_FAST_MODE=1
# export PKG_COPY_QT_LIBS=1
./scripts/captk-pkg
rm -rf src
rm -rf docs*
rm -rf scripts
# cp *_Installer.* $(Build.ArtifactStagingDirectory)/CaPTk_LATEST_Installer.bin
mv *_Installer.* $(Build.ArtifactStagingDirectory)
displayName: 'Set up environment variables for packager and build a package'
- bash: |
rm -rf src
rm -rf docs*
rm -rf data
rm -rf binaries
rm -rf scripts
rm -rf bin_linux_20191213.tar.gz
rm -rf CMakeLists.txt
cd bin
tar cvfz qt.tar.gz qt
tar cvfz externalApps.tar.gz externalApps
rm -rf qt
rm -rf externalApps
rm -rf _CPack*
rm -rf CMakeCache.txt
# cmake -UPROJECT_VERSION # delete the project version definition
cd ../
mv bin bin_linux
tar cvfz bin_linux_20191213.tar.gz bin_linux
rm -rf bin_linux
displayName: 'Zipping bin'
- task: PublishBuildArtifacts@1
inputs:
pathtoPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: '$(Build.DefinitionName)_installer_Linux'
continueOnError: true
- task: DownloadBuildArtifacts@0
inputs:
buildType: 'current'
downloadType: 'single'
artifactName: '$(Build.DefinitionName)_installer_Linux'
downloadPath: '$(System.ArtifactsDirectory)'
continueOnError: true
- task: CopyFilesOverSSH@0
inputs:
sshEndpoint: cbicaNITRC
sourceFolder: $(Build.ArtifactStagingDirectory)
contents: '*_Installer.*'
targetFolder: /mnt/gforge-data/gforge/home/groups/captk/downloads
cleanTargetFolder: false
overwrite: true
continueOnError: true
displayName: Uploading to NITRC
condition: eq(variables['Build.DefinitionName'], 'CBICA.CaPTk')
- job: 'MacOSBuild'
displayName: "End-to-end MacOS build & package"
timeoutInMinutes: 0
cancelTimeoutInMinutes: 300
pool:
vmImage: 'MacOS-10.13'
steps:
- checkout: self # self represents the repo where the initial Pipelines YAML file was found
# fetchDepth: 1 # the depth of commits to ask Git to fetch; defaults to no limit
# submodule
- bash: |
git submodule update --init --recursive
# ls -lt
# ls ./src/applications/Preprocessing/greedy
displayName: 'Git Submodule Init and Update'
- task: CacheBeta@0
inputs:
key: '"bin_macos_20191213.tar.gz" | "$(Build.DefinitionName)"'
path: $(Build.SourcesDirectory)
cacheHitVar: CACHE_RESTORED_MAC
continueOnError : true
restoreKeys: |
"bin_macos_20191213.tar.gz"
displayName: 'Caching'
- bash: |
brew install make doxygen libomp openmpi glfw
#brew install caskroom/cask/mactex # latex is not used for documentation right now
export GIT_LFS_SKIP_SMUDGE=1
displayName: 'Brew dependencies'
# - bash: |
# brew install git-lfs
# git lfs install
# displayName: 'Brew dependency install LFS'
# condition: ne(variables['CACHE_RESTORED_MAC'], 'true')
# # Pull LFS
# - bash: |
# export GIT_LFS_SKIP_SMUDGE=1
# git lfs pull --include "binaries/precompiledApps/macos.zip"
# git lfs pull --include "binaries/qt_5.12.1/macos.zip"
# #echo "Not doing this until quota is improved on GitHub"
# displayName: 'Pull LFS'
# condition: ne(variables['CACHE_RESTORED_MAC'], 'true')
- bash: |
tar xvfz bin_macos_20191213.tar.gz
rm -rf bin_macos_20191213.tar.gz
# ls
mv bin_macos bin
# ls
cd bin
tar xvfz qt.tar.gz
tar xvfz externalApps.tar.gz
rm -rf *.tar.gz
ls -lt
displayName: 'Unzip bin if cached'
condition: eq(variables['CACHE_RESTORED_MAC'], 'true')
# Moving LFS Files
- bash: |
mkdir -p bin
cd bin
wget https://github.com/CBICA/CaPTk/raw/master/binaries/precompiledApps/macos.zip -O binaries_macos.zip
wget https://github.com/CBICA/CaPTk/raw/master/binaries/qt_5.12.1/macos.zip -O qt.zip
# mv ../binaries/precompiledApps/macos.zip ./binaries_macos.zip
# mv ../binaries/qt_5.12.1/macos.zip ./qt.zip
ls -lt
displayName: 'Downloading & Moving LFS files to the appropriate location under bin'
condition: ne(variables['CACHE_RESTORED_MAC'], 'true')
- bash: |
cd bin
export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
cmake ../ -DCMAKE_INSTALL_PREFIX="./install"
make -j 2
displayName: 'Configure and compile Superbuild'
condition: ne(variables['CACHE_RESTORED_MAC'], 'true')
# Check qt
- bash: |
cd bin
ls -a
ls ./qt/
displayName: 'Check qt'
- bash: |
tar cvfz bin_macos_20191213.tar.gz bin
displayName: 'Zipping Superbuild'
- bash: |
git pull origin master
git log -1
cat CMakeLists.txt | grep -i "PROJECT_VERSION"
displayName: 'Testing git pull and version'
- bash: |
cd bin
sudo rm -rf CaPTk_*
cmake ../
rm CMakeCache.txt
export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
cmake -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build ../
make -j 2
displayName: 'Configure and compile CaPTk'
- script: |
cd bin
sudo rm -rf CaPTk_*
cmake ../
rm CMakeCache.txt
export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
cmake -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=ON ../
make -j 2
make test
rm -rf testing
displayName: 'Performing the Tests'
- bash: |
cd bin
version=$(grep -i -e "project_version:*" CMakeCache.txt | cut -c24-)
sudo rm -rf CaPTk_$version.app/Contents/Resources/bin/ITK-SNAP.app
rm -rf CaPTk*.app
cmake ../
rm CMakeCache.txt
export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
cmake -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build -DBUILD_TESTING=OFF ../
make -j 2
displayName: 'Ensure documentation is picked up properly'
- bash: |
cd bin
version=$(grep -i -e "project_version:*" CMakeCache.txt | cut -c24-)
pkgname="_Installer"
pkgname="$version$pkgname"
rm -rf *.pkg
# rm -rf _CPack*
rm -rf install_manifest.txt
make package
# echo "Change deepmedic libomp dylib path"
# sudo install_name_tool -change /usr/local/opt/libomp/lib/libomp.dylib @executable_path/../../Frameworks/libomp.dylib ./_CPack_Packages/OSX/DragNDrop/CaPTk_$version/CaPTk_$version.app/Contents/Resources/bin/DeepMedic
pkgbuild --version $version --identifier com.cbica.captk --install-location /Applications --component $(Build.SourcesDirectory)/bin/_CPack_Packages/OSX/DragNDrop/CaPTk_$version/ALL_IN_ONE/CaPTk_$version.app/ ./CaPTk_$version.pkg
productbuild --synthesize --package CaPTk_$version.pkg ./distribution.xml
xml='<?xml version="1.0" encoding="utf-8"?>
<installer-gui-script minSpecVersion="1">
<title>CaPTk_'"$version"'</title>
<license file="Combined.txt"></license>
<pkg-ref id="com.cbica.captk"/>
<options customize="never" require-scripts="false"/>
<choices-outline>
<line choice="default">
<line choice="com.cbica.captk"/>
</line>
</choices-outline>
<choice id="default"/>
<choice id="com.cbica.captk" visible="false">
<pkg-ref id="com.cbica.captk"/>
</choice>
<pkg-ref id="com.cbica.captk" version="$version" onConclusion="none">CaPTk_'"$version"'.pkg</pkg-ref>
</installer-gui-script>'
echo $xml > "./distribution.xml"
productbuild --distribution ./distribution.xml --resources $(Build.SourcesDirectory)/bin/_CPack_Packages/OSX/DragNDrop/CaPTk_$version/ALL_IN_ONE/CaPTk_$version.app/Contents/Resources/license/ --package-path . ./CaPTk_$pkgname.pkg
# cp *_Installer.* $(Build.ArtifactStagingDirectory)/CaPTk_LATEST_Installer.pkg
mv *_Installer.* $(Build.ArtifactStagingDirectory)
sudo rm -rf _CPack*
# sudo rm -rf *
displayName: 'Package CaPTk (.dmg and .pkg)'
- bash: |
rm -rf src
rm -rf docs*
rm -rf data
rm -rf binaries
rm -rf scripts
rm -rf bin_macos_20191213.tar.gz
rm -rf CMakeLists.txt
cd bin
tar cvfz qt.tar.gz qt
tar cvfz externalApps.tar.gz externalApps
rm -rf qt
rm -rf externalApps
rm -rf _CPack*
rm -rf CMakeCache.txt
# cmake -UPROJECT_VERSION # delete the project version definition
cd ../
# ls
mv bin bin_macos
# ls
tar cvfz bin_macos_20191213.tar.gz bin_macos
# rm -rf bin_macos
displayName: 'Zipping bin'
- task: PublishBuildArtifacts@1
inputs:
pathtoPublish: '$(Build.ArtifactStagingDirectory)'
artifactName: '$(Build.DefinitionName)_installer_macOS'
- task: DownloadBuildArtifacts@0
inputs:
buildType: 'current'
downloadType: 'single'
artifactName: '$(Build.DefinitionName)_installer_macOS'
downloadPath: '$(System.ArtifactsDirectory)'
- task: CopyFilesOverSSH@0
inputs:
sshEndpoint: cbicaNITRC
sourceFolder: $(Build.ArtifactStagingDirectory)
contents: '*_Installer.*'
targetFolder: /mnt/gforge-data/gforge/home/groups/captk/downloads
cleanTargetFolder: false
overwrite: true
continueOnError: true
displayName: Uploading to NITRC
condition: eq(variables['Build.DefinitionName'], 'CBICA.CaPTk')
# - job: 'MacOSSelfHostBuild'
# displayName: "Self-hosted MacOS agent"
# timeoutInMinutes: 0
# cancelTimeoutInMinutes: 300
# pool: Default
# steps:
# - checkout: self # self represents the repo where the initial Pipelines YAML file was found
# # submodule
# - bash: |
# git submodule update --init --recursive
# displayName: 'Git Submodule Init and Update'
# # Moving LFS Files
# - bash: |
# mkdir -p bin
# cd bin
# wget https://github.com/CBICA/CaPTk/raw/master/binaries/precompiledApps/macos.zip -O binaries_macos.zip
# wget https://github.com/CBICA/CaPTk/raw/master/binaries/qt_5.12.1/macos.zip -O qt.zip
# # mv ../binaries/precompiledApps/macos.zip ./binaries_macos.zip
# # mv ../binaries/qt_5.12.1/macos.zip ./qt.zip
# ls -lt
# displayName: 'Downloading & Moving LFS files to the appropriate location under bin'
# - bash: |
# cd bin
# export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
# export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
# cmake ../ -DCMAKE_INSTALL_PREFIX="./install"
# make -j 2
# displayName: 'Configure and compile Superbuild'
# # Check qt
# - bash: |
# cd bin
# ls -a
# ls ./qt/
# displayName: 'Check qt'
# - bash: |
# git pull origin master
# git log -1
# cat CMakeLists.txt | grep -i "PROJECT_VERSION"
# displayName: 'Testing git pull and version'
# - bash: |
# cd bin
# sudo rm -rf CaPTk_*
# cmake ../
# rm CMakeCache.txt
# export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
# export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
# export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
# cmake -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build ../
# make -j 2
# displayName: 'Configure and compile CaPTk'
# - bash: |
# cd bin
# version=$(grep -i -e "project_version:*" CMakeCache.txt | cut -c24-)
# sudo rm -rf CaPTk_$version.app/Contents/Resources/bin/ITK-SNAP.app
# rm -rf CaPTk*.app
# cmake ../
# rm CMakeCache.txt
# export CMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE
# export CMAKE_PREFIX_PATH="/Library/TeX/texbin"
# export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
# cmake -DITK_DIR=./ITK-build -DDCMTK_DIR=./DCMTK-build ../
# make -j 2
# displayName: 'Ensure documentation is picked up properly'
# - bash: |
# cd bin
# version=$(grep -i -e "project_version:*" CMakeCache.txt | cut -c24-)
# pkgname="_Installer"
# pkgname="$version$pkgname"
# rm -rf *.pkg
# rm -rf install_manifest.txt
# make package
# pkgbuild --version $version --identifier com.cbica.captk --install-location /Applications --component $(Build.SourcesDirectory)/bin/_CPack_Packages/OSX/DragNDrop/CaPTk_$version/ALL_IN_ONE/CaPTk_$version.app/ ./CaPTk_$version.pkg
# productbuild --synthesize --package CaPTk_$version.pkg ./distribution.xml
# xml='<?xml version="1.0" encoding="utf-8"?>
# <installer-gui-script minSpecVersion="1">
# <title>CaPTk_'"$version"'</title>
# <license file="Combined.txt"></license>
# <pkg-ref id="com.cbica.captk"/>
# <options customize="never" require-scripts="false"/>
# <choices-outline>
# <line choice="default">
# <line choice="com.cbica.captk"/>
# </line>
# </choices-outline>
# <choice id="default"/>
# <choice id="com.cbica.captk" visible="false">
# <pkg-ref id="com.cbica.captk"/>
# </choice>
# <pkg-ref id="com.cbica.captk" version="$version" onConclusion="none">CaPTk_'"$version"'.pkg</pkg-ref>
# </installer-gui-script>'
# echo $xml > "./distribution.xml"
# productbuild --distribution ./distribution.xml --resources $(Build.SourcesDirectory)/bin/_CPack_Packages/OSX/DragNDrop/CaPTk_$version/ALL_IN_ONE/CaPTk_$version.app/Contents/Resources/license/ --package-path . ./CaPTk_$pkgname.pkg
# mv *_Installer.* $(Build.ArtifactStagingDirectory)
# sudo rm -rf _CPack*
# displayName: 'Package CaPTk (.dmg and .pkg)'
# - task: PublishBuildArtifacts@1
# inputs:
# pathtoPublish: '$(Build.ArtifactStagingDirectory)'
# artifactName: '$(Build.DefinitionName)_installer_macOS'
# - task: DownloadBuildArtifacts@0
# inputs:
# buildType: 'current'
# downloadType: 'single'
# artifactName: '$(Build.DefinitionName)_installer_macOS'
# downloadPath: '$(System.ArtifactsDirectory)'
# - job: 'DockerBuild'
# displayName: "End-to-end Docker_CentOS image build and push"
# timeoutInMinutes: 0
# cancelTimeoutInMinutes: 360
# variables:
# dockerId: cbica
# imageName: captk
# tagName: latest
# pool:
# vmImage: 'Ubuntu-16.04'
# steps:
# - checkout: self # self represents the repo where the initial Pipelines YAML file was found
# # fetchDepth: 1 # the depth of commits to ask Git to fetch; defaults to no limit
# - task: Docker@1
# displayName: 'Build the Image'
# inputs:
# containerregistrytype: 'container Registry'
# dockerRegistryEndpoint: cbicaDockerHub
# imageName: 'cbica/captk:latest'
# command: build an image
# dockerFile: '**/Dockerfile'
# - task: Docker@1
# displayName: Login
# inputs:
# containerregistrytype: 'container Registry'
# dockerRegistryEndpoint: cbicaDockerHub
# command: login
# - task: Docker@1
# displayName: 'Push the Image'
# inputs:
# command: push an image
# imageName: 'cbica/captk:latest'
# - job: 'CentOSBuild'
# displayName: "End-to-end Linux (CentOS) build on Docker"
# timeoutInMinutes: 0
# cancelTimeoutInMinutes: 300
# pool:
# vmImage: 'Ubuntu-16.04'
# container: centos
# steps:
# - checkout: self # self represents the repo where the initial Pipelines YAML file was found
# #fetchDepth: 1 # the depth of commits to ask Git to fetch; defaults to no limit
# # submodule
# - bash: |
# cd CaPTk
# git submodule init
# git submodule update
# displayName: 'Git Submodule Init and Update'
# # # Pull LFS
# # - bash: |
# # export GIT_LFS_SKIP_SMUDGE=1
# # git lfs pull --include "binaries/precompiledApps/linux.zip"
# # git lfs pull --include "binaries/qt_5.12.1/linux.zip"
# # #echo "Not doing this until quota is improved on GitHub"
# # displayName: 'Pull LFS'
# # # condition: ne(variables.CACHE_RESTORED_LINUX_CENTOS, 'true')
# # Configure and build CaPTk
# - bash: |
# cd CaPTk/bin
# export CMAKE_PREFIX_PATH=$(Build.SourcesDirectory)/bin/ITK-build:$(Build.SourcesDirectory)/bin/DCMTK-build:$(Build.SourcesDirectory)/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
# cmake -DITK_DIR=$(Build.SourcesDirectory)/bin/ITK-build -DDCMTK_DIR=$(Build.SourcesDirectory)/bin/DCMTK-build -DCMAKE_INSTALL_PREFIX="./install/appdir/usr" -DBUILD_TESTING=OFF -DQT_DOWNLOAD_FORCE=ON ..
# make -j2
# make install/strip
# displayName: 'Configure and compile CaPTk'
# # Check qt
# - bash: |
# cd $(Build.SourcesDirectory)/bin
# ls -a
# ls ./qt/
# displayName: 'Check qt'
# # Check libra
# - bash: |
# cd $(Build.SourcesDirectory)/bin/install/appdir/usr/bin/
# ls -l
# displayName: 'Checking ${installDir}/bin'
# # Build a package
# - bash: |
# cd $(Build.SourcesDirectory)
# export PATH=`pwd`/bin/qt/5.12.1/bin:`pwd`/bin/qt/5.12.1/libexec:$PATH
# export CMAKE_PREFIX_PATH=`pwd`/bin/qt/5.12.1/lib/cmake/Qt5:$CMAKE_PREFIX_PATH
# rm -rf regression
# rm -rf binaries
# # export PKG_FAST_MODE=1
# ./scripts/captk-pkg
# rm -rf src
# rm -rf docs*
# rm -rf scripts
# mv *_Installer.* $(Build.ArtifactStagingDirectory)
# displayName: 'Set up environment variables for packager and build a package'
# - bash: |
# cd $(Build.SourcesDirectory)
# rm -rf src
# rm -rf docs*
# rm -rf data
# rm -rf binaries
# rm -rf scripts
# cd bin
# tar cvfz qt.tar.gz qt
# tar cvfz externalApps.tar.gz externalApps
# rm -rf qt